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Ctcf CCCTC-binding factor [ Microtus ochrogaster (prairie vole) ]

Gene ID: 101981421, updated on 8-Mar-2024

Summary

Gene symbol
Ctcf
Gene description
CCCTC-binding factor
See related
Ensembl:ENSMOCG00000021276
Gene type
protein coding
RefSeq status
MODEL
Organism
Microtus ochrogaster
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Microtus
Orthologs
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Genomic context

Location:
chromosome: 4
Exon count:
12
Annotation release Status Assembly Chr Location
102 current MicOch1.0 (GCF_000317375.1) 4 NC_022011.1 (5230514..5282946, complement)

Chromosome 4 - NC_022011.1Genomic Context describing neighboring genes Neighboring gene par-6 family cell polarity regulator alpha Neighboring gene capping protein regulator and myosin 1 linker 2 Neighboring gene ACD shelterin complex subunit and telomerase recruitment factor Neighboring gene agouti related neuropeptide Neighboring gene RHO family interacting cell polarization regulator 1 Neighboring gene ATPase H+ transporting V0 subunit d1

Genomic regions, transcripts, and products

Genomic Sequence:
NC_022011.1 Chromosome 4 Reference MicOch1.0

General protein information

Preferred Names
transcriptional repressor CTCF

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microtus ochrogaster Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MicOch1.0

Genomic

  1. NC_022011.1 Reference MicOch1.0

    Range
    5230514..5282946 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005345462.2XP_005345519.1  transcriptional repressor CTCF isoform X2

    UniProtKB/TrEMBL
    A0A8J6GMU0
    Related
    ENSMOCP00000025038.1, ENSMOCT00000028904.1
    Conserved Domains (4) summary
    COG5048
    Location:366500
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:268288
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:280305
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:351375
    zf-H2C2_5; C2H2-type zinc-finger domain
  2. XM_005345461.2XP_005345518.1  transcriptional repressor CTCF isoform X1

    UniProtKB/TrEMBL
    A0A8J6GMU0
    Conserved Domains (4) summary
    COG5048
    Location:366500
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:268288
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:280305
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:351375
    zf-H2C2_5; C2H2-type zinc-finger domain