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Trappc9 trafficking protein particle complex subunit 9 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101973949, updated on 8-Mar-2024

Summary

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Gene symbol
Trappc9
Gene description
trafficking protein particle complex subunit 9
Locus tag
H1C71_018922
See related
EnsemblRapid:ENSSTOG00015015863
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
26
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024405303.1 (3318751..3816953)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936470.1 (10747343..11243052)

NW_024405303.1Genomic Context describing neighboring genes Neighboring gene septin-14-like Neighboring gene chromatin accessibility complex subunit 1 Neighboring gene uncharacterized LOC120892874 Neighboring gene uncharacterized LOC120892873 Neighboring gene potassium two pore domain channel subfamily K member 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trafficking protein particle complex subunit 9
Names
trafficking protein particle complex 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024405303.1 Reference HiC_Itri_2 Primary Assembly

    Range
    3318751..3816953
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040293606.1 → XP_040149540.1  trafficking protein particle complex subunit 9 isoform X3

    UniProtKB/TrEMBL
    I3LVV7

  2. XM_040293604.1 → XP_040149538.1  trafficking protein particle complex subunit 9 isoform X1

    UniProtKB/TrEMBL
    I3LVV7

  3. XM_040293603.1 → XP_040149537.1  trafficking protein particle complex subunit 9 isoform X1

    UniProtKB/TrEMBL
    I3LVV7
    Related
    ENSSTOP00015019422.1, ENSSTOT00015021285.1

  4. XM_013356947.3 → XP_013212401.1  trafficking protein particle complex subunit 9 isoform X4

    UniProtKB/TrEMBL
    I3LVV7
    Related
    ENSSTOP00015019425.1, ENSSTOT00015021287.1
    Conserved Domains (1) summary
    pfam08626
    Location:70 → 1093
    TRAPPC9-Trs120; Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit

  5. XM_040293605.1 → XP_040149539.1  trafficking protein particle complex subunit 9 isoform X2

    UniProtKB/TrEMBL
    I3LVV7
    Conserved Domains (1) summary
    pfam08626
    Location:70 → 1102
    TRAPPC9-Trs120; Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit

  6. XM_040293607.1 → XP_040149541.1  trafficking protein particle complex subunit 9 isoform X2

    UniProtKB/TrEMBL
    I3LVV7
    Conserved Domains (1) summary
    pfam08626
    Location:70 → 1102
    TRAPPC9-Trs120; Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit
Nucleotide Protein
Heading Accession and Version

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