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Ush1g USH1 protein network component sans [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101971432, updated on 8-Mar-2024

Summary

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Gene symbol
Ush1g
Gene description
USH1 protein network component sans
Locus tag
H1C71_021511
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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See Ush1g in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024405602.1 (6149216..6153844)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936594.1 (258115..262739, complement)

NW_024405602.1Genomic Context describing neighboring genes Neighboring gene otopetrin 3 Neighboring gene otopetrin 2 Neighboring gene fatty acid desaturase 6 Neighboring gene ferredoxin reductase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Usher syndrome type-1G protein
Names
Usher syndrome type-1G protein homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024405602.1 Reference HiC_Itri_2 Primary Assembly

    Range
    6149216..6153844
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005332696.3 → XP_005332753.1  Usher syndrome type-1G protein

    UniProtKB/TrEMBL
    I3MVD8
    Conserved Domains (5) summary
    sd00045
    Location:31 → 62
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:5 → 50
    Ank_4; Ankyrin repeats (many copies)
    pfam12796
    Location:38 → 117
    Ank_2; Ankyrin repeats (3 copies)
    cd21803
    Location:296 → 388
    CEN_USH1G; central domain found in usher syndrome type-1G protein
    cl15755
    Location:388 → 420
    SAM_superfamily; SAM (Sterile alpha motif )
Nucleotide Protein
Heading Accession and Version

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