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LOC101969737 procathepsin L [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101969737, updated on 16-Nov-2023

Summary

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Gene symbol
LOC101969737
Gene description
procathepsin L
Locus tag
H1C71_035987
See related
EnsemblRapid:ENSSTOG00015001325
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Also known as
Ctsv
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024404944.1 (6474523..6479682, complement)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936487.1 (690826..696099, complement)

NW_024404944.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 782 Neighboring gene 39S ribosomal protein L13, mitochondrial-like Neighboring gene spermatogenesis-associated protein 31A6-like Neighboring gene family with sequence similarity 240 member B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis involved in protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
procathepsin L
Names
cathepsin V

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024404944.1 Reference HiC_Itri_2 Primary Assembly

    Range
    6474523..6479682 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005320857.4 → XP_005320914.1  procathepsin L

    UniProtKB/TrEMBL
    I3MAI4
    Related
    ENSSTOP00015001616.1, ENSSTOT00015001784.1
    Conserved Domains (2) summary
    smart00848
    Location:29 → 87
    Inhibitor_I29; Cathepsin propeptide inhibitor domain (I29)
    pfam00112
    Location:116 → 331
    Peptidase_C1; Papain family cysteine protease
Nucleotide Protein
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