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Irf3 interferon regulatory factor 3 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101961861, updated on 8-Mar-2024

Summary

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Gene symbol
Irf3
Gene description
interferon regulatory factor 3
Locus tag
H1C71_039574
See related
EnsemblRapid:ENSSTOG00015011629
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024409349.1 (21859560..21863357, complement)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936664.1 (3477750..3482489, complement)

NW_024409349.1Genomic Context describing neighboring genes Neighboring gene RAS related Neighboring gene SR-related CTD associated factor 1 Neighboring gene BCL2 like 12 Neighboring gene protein arginine methyltransferase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
interferon regulatory factor 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024409349.1 Reference HiC_Itri_2 Primary Assembly

    Range
    21859560..21863357 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040279790.1 → XP_040135724.1  interferon regulatory factor 3 isoform X2

    Related
    ENSSTOP00015014291.1, ENSSTOT00015015652.1
    Conserved Domains (1) summary
    smart00348
    Location:7 → 111
    IRF; interferon regulatory factor

  2. XM_021734187.2 → XP_021589862.2  interferon regulatory factor 3 isoform X1

    UniProtKB/TrEMBL
    I3N2H6
    Conserved Domains (1) summary
    smart00348
    Location:7 → 111
    IRF; interferon regulatory factor
Nucleotide Protein
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