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Setd2 SET domain containing 2, histone lysine methyltransferase [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101961276, updated on 8-Mar-2024

Summary

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Gene symbol
Setd2
Gene description
SET domain containing 2, histone lysine methyltransferase
Locus tag
H1C71_006832
See related
EnsemblRapid:ENSSTOG00015021870
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024405118.1 (201246801..201349701, complement)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936596.1 (795940..898823, complement)

NW_024405118.1Genomic Context describing neighboring genes Neighboring gene neurobeachin like 2 Neighboring gene death domain-containing membrane protein NRADD-like Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC120891479 Neighboring gene kinesin family member 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone H3K36 methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chromosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone-lysine N-methyltransferase SETD2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024405118.1 Reference HiC_Itri_2 Primary Assembly

    Range
    201246801..201349701 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013361835.3 → XP_013217289.1  histone-lysine N-methyltransferase SETD2

    UniProtKB/TrEMBL
    I3MXV7
    Related
    ENSSTOP00015027011.1, ENSSTOT00015029360.1
    Conserved Domains (5) summary
    smart00570
    Location:1450 → 1504
    AWS; associated with SET domains
    COG5271
    Location:1791 → 2074
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    cd19172
    Location:1504 → 1645
    SET_SETD2; SET domain (including post-SET domain) found in SET domain-containing protein 2 (SETD2) and similar proteins
    pfam00397
    Location:2346 → 2375
    WW; WW domain
    pfam08236
    Location:2422 → 2510
    SRI; SRI (Set2 Rpb1 interacting) domain

RNA

  1. XR_005735911.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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