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Wdr81 WD repeat domain 81 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101959431, updated on 8-Mar-2024

Summary

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Gene symbol
Wdr81
Gene description
WD repeat domain 81
Locus tag
H1C71_022603
See related
EnsemblRapid:ENSSTOG00015021926
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024405602.1 (44978282..44990310)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936538.1 (7856263..7868249)

NW_024405602.1Genomic Context describing neighboring genes Neighboring gene pre-mRNA processing factor 8 Neighboring gene POU domain, class 5, transcription factor 1-like Neighboring gene uncharacterized LOC120884179 Neighboring gene serpin family F member 2 Neighboring gene small nucleolar RNA U83B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol 3-kinase regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in aggrephagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WD repeat-containing protein 81

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024405602.1 Reference HiC_Itri_2 Primary Assembly

    Range
    44978282..44990310
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005327905.4 → XP_005327962.1  WD repeat-containing protein 81 isoform X1

    UniProtKB/TrEMBL
    I3N259
    Related
    ENSSTOP00015027096.1, ENSSTOT00015029446.1
    Conserved Domains (3) summary
    cd06071
    Location:349 → 589
    Beach; BEACH (Beige and Chediak-Higashi) domains, implicated in membrane trafficking, are present in a family of proteins conserved throughout eukaryotes. This group contains human lysosomal trafficking regulator (LYST), LPS-responsive and beige-like anchor ...
    sd00039
    Location:1652 → 1695
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:1641 → 1939
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_021728160.2 → XP_021583835.1  WD repeat-containing protein 81 isoform X3

    Conserved Domains (3) summary
    cd06071
    Location:349 → 589
    Beach; BEACH (Beige and Chediak-Higashi) domains, implicated in membrane trafficking, are present in a family of proteins conserved throughout eukaryotes. This group contains human lysosomal trafficking regulator (LYST), LPS-responsive and beige-like anchor ...
    sd00039
    Location:1652 → 1695
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:1641 → 1728
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  3. XM_040269279.1 → XP_040125213.1  WD repeat-containing protein 81 isoform X4

    Conserved Domains (1) summary
    cd06071
    Location:349 → 589
    Beach; BEACH (Beige and Chediak-Higashi) domains, implicated in membrane trafficking, are present in a family of proteins conserved throughout eukaryotes. This group contains human lysosomal trafficking regulator (LYST), LPS-responsive and beige-like anchor ...

  4. XM_013359802.3 → XP_013215256.1  WD repeat-containing protein 81 isoform X2

    UniProtKB/TrEMBL
    A0A287CXZ9
    Conserved Domains (3) summary
    cd06071
    Location:349 → 589
    Beach; BEACH (Beige and Chediak-Higashi) domains, implicated in membrane trafficking, are present in a family of proteins conserved throughout eukaryotes. This group contains human lysosomal trafficking regulator (LYST), LPS-responsive and beige-like anchor ...
    sd00039
    Location:1616 → 1659
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:1605 → 1903
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RNA

  1. XR_002484248.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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