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Hal histidine ammonia-lyase [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101956363, updated on 19-Jun-2024

Summary

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Gene symbol
Hal
Gene description
histidine ammonia-lyase
Locus tag
H1C71_012533
See related
EnsemblRapid:ENSSTOG00015003077
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024404945.1 (24156940..24178046)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936507.1 (12058583..12078159, complement)

NW_024404945.1Genomic Context describing neighboring genes Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene leukotriene A4 hydrolase Neighboring gene transmembrane protein 230-like Neighboring gene amidohydrolase domain containing 1 Neighboring gene coiled-coil domain containing 38 Neighboring gene small nuclear ribonucleoprotein polypeptide F

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histidine ammonia-lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-histidine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histidine ammonia-lyase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024404945.1 Reference HiC_Itri_2 Primary Assembly

    Range
    24156940..24178046
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005324450.4 → XP_005324507.1  histidine ammonia-lyase

    UniProtKB/TrEMBL
    I3MFK4
    Related
    ENSSTOP00015003726.1, ENSSTOT00015004146.1
    Conserved Domains (2) summary
    TIGR01225
    Location:114 → 625
    hutH; histidine ammonia-lyase
    pfam12053
    Location:15 → 78
    DUF3534; N-terminal of Par3 and HAL proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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