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Pde5a phosphodiesterase 5A [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101955464, updated on 8-Mar-2024

Summary

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Gene symbol
Pde5a
Gene description
phosphodiesterase 5A
Locus tag
H1C71_038441
See related
EnsemblRapid:ENSSTOG00015004213
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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See Pde5a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024405301.1 (67158923..67251772)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936869.1 (24265..117120)

NW_024405301.1Genomic Context describing neighboring genes Neighboring gene mitotic arrest deficient 2 like 1 Neighboring gene uncharacterized LOC120892622 Neighboring gene uncharacterized LOC120892623 Neighboring gene fatty acid binding protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3',5'-cyclic-GMP phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cGMP-specific 3',5'-cyclic phosphodiesterase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024405301.1 Reference HiC_Itri_2 Primary Assembly

    Range
    67158923..67251772
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005341337.4 → XP_005341394.1  cGMP-specific 3',5'-cyclic phosphodiesterase isoform X1

    Related
    ENSSTOP00015005092.1, ENSSTOT00015005641.1
    Conserved Domains (2) summary
    smart00065
    Location:122 → 279
    GAF; Domain present in phytochromes and cGMP-specific phosphodiesterases
    pfam00233
    Location:569 → 804
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase

  2. XM_040293360.1 → XP_040149294.1  cGMP-specific 3',5'-cyclic phosphodiesterase isoform X2

    UniProtKB/TrEMBL
    I3N9J4
    Conserved Domains (2) summary
    smart00065
    Location:112 → 269
    GAF; Domain present in phytochromes and cGMP-specific phosphodiesterases
    cd00077
    Location:559 → 734
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif
Nucleotide Protein
Heading Accession and Version

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