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Txnl4a thioredoxin like 4A [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101955415, updated on 8-Mar-2024

Summary

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Gene symbol
Txnl4a
Gene description
thioredoxin like 4A
Locus tag
H1C71_036197
See related
EnsemblRapid:ENSSTOG00015005531
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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See Txnl4a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024404944.1 (14899459..14912032)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936616.1 (220255..232042)

NW_024404944.1Genomic Context describing neighboring genes Neighboring gene ribosome binding factor A Neighboring gene glyoxylate/hydroxypyruvate reductase B-like Neighboring gene heat shock factor binding protein 1 like 1 Neighboring gene uncharacterized LOC120885226

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U5 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
thioredoxin-like protein 4A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024404944.1 Reference HiC_Itri_2 Primary Assembly

    Range
    14899459..14912032
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005334364.4 → XP_005334421.1  thioredoxin-like protein 4A isoform X1

    See identical proteins and their annotated locations for XP_005334421.1

    UniProtKB/TrEMBL
    I3NDL4
    Related
    ENSSTOP00015006729.1, ENSSTOT00015007419.1
    Conserved Domains (1) summary
    PLN00410
    Location:1 → 142
    PLN00410; U5 snRNP protein, DIM1 family; Provisional

  2. XM_040271735.1 → XP_040127669.1  thioredoxin-like protein 4A isoform X2

    Conserved Domains (1) summary
    cl00388
    Location:1 → 71
    Thioredoxin_like; Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold

  3. XM_040271742.1 → XP_040127676.1  thioredoxin-like protein 4A isoform X2

    Conserved Domains (1) summary
    cl00388
    Location:1 → 71
    Thioredoxin_like; Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold
Nucleotide Protein
Heading Accession and Version

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