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SMARCA2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 [ Chrysemys picta bellii (western painted turtle) ]

Gene ID: 101945389, updated on 1-Aug-2024

Summary

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Gene symbol
SMARCA2
Gene description
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
See related
Ensembl:ENSCPBG00000025463
Gene type
protein coding
RefSeq status
MODEL
Organism
Chrysemys picta bellii (sub-species: bellii)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Chrysemys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
41
Annotation release Status Assembly Chr Location
RS_2024_05 current ASM1138683v2 (GCF_011386835.1) 6 NC_088796.1 (92728229..92905154, complement)
102 previous assembly Chrysemys_picta_bellii-3.0.3 (GCF_000241765.3) 6 NC_024223.1 (11770094..11944759)

Chromosome 6 - NC_088796.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC135972221 Neighboring gene uncharacterized LOC122173750 Neighboring gene uncharacterized LOC135972219 Neighboring gene doublesex and mab-3 related transcription factor 2 Neighboring gene doublesex and mab-3 related transcription factor 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RSC-type complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable global transcription activator SNF2L2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011386835.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1138683v2

Genomic

  1. NC_088796.1 Reference ASM1138683v2

    Range
    92728229..92905154 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005296768.5 → XP_005296825.1  probable global transcription activator SNF2L2 isoform X2

    UniProtKB/TrEMBL
    A0AAJ6RFX8, A0AAJ6W8Q9
    Conserved Domains (10) summary
    cd05516
    Location:1390 → 1496
    Bromo_SNF2L2; Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone ...
    smart00592
    Location:597 → 639
    BRK; domain in transcription and CHROMO domain helicases
    smart00573
    Location:443 → 515
    HSA; domain in helicases and associated with SANT domains
    cd00046
    Location:752 → 891
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam08430
    Location:55 → 174
    Forkhead_N; Forkhead N-terminal region
    pfam00176
    Location:735 → 1030
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:1057 → 1172
    Helicase_C; Helicase conserved C-terminal domain
    pfam08880
    Location:173 → 207
    QLQ; QLQ
    pfam11235
    Location:140 → 321
    Med25_SD1; Mediator complex subunit 25 synapsin 1
    pfam14619
    Location:1267 → 1334
    SnAC; Snf2-ATP coupling, chromatin remodelling complex

  2. XM_005296771.5 → XP_005296828.1  probable global transcription activator SNF2L2 isoform X4

    UniProtKB/TrEMBL
    A0A8C3INN7, A0AAJ6RFX8
    Related
    ENSCPBP00000036677.1
    Conserved Domains (10) summary
    cd05516
    Location:1380 → 1486
    Bromo_SNF2L2; Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone ...
    smart00592
    Location:587 → 629
    BRK; domain in transcription and CHROMO domain helicases
    smart00573
    Location:433 → 505
    HSA; domain in helicases and associated with SANT domains
    cd00046
    Location:742 → 881
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam08430
    Location:55 → 174
    Forkhead_N; Forkhead N-terminal region
    pfam00176
    Location:725 → 1020
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:1047 → 1162
    Helicase_C; Helicase conserved C-terminal domain
    pfam08880
    Location:173 → 207
    QLQ; QLQ
    pfam11235
    Location:140 → 311
    Med25_SD1; Mediator complex subunit 25 synapsin 1
    pfam14619
    Location:1257 → 1324
    SnAC; Snf2-ATP coupling, chromatin remodelling complex

  3. XM_005296765.5 → XP_005296822.1  probable global transcription activator SNF2L2 isoform X1

    See identical proteins and their annotated locations for XP_005296822.1

    UniProtKB/TrEMBL
    A0AAJ6RFJ7, A0AAJ6RFX8
    Conserved Domains (8) summary
    cd05516
    Location:1392 → 1498
    Bromo_SNF2L2; Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone ...
    smart00573
    Location:445 → 517
    HSA; domain in helicases and associated with SANT domains
    PLN03142
    Location:730 → 1212
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    PHA03378
    Location:82 → 391
    PHA03378; EBNA-3B; Provisional
    cd18063
    Location:711 → 961
    DEXHc_SMARCA2; DEXH-box helicase domain of SMARCA2
    pfam07533
    Location:599 → 641
    BRK; BRK domain
    pfam08880
    Location:173 → 207
    QLQ
    pfam14619
    Location:1270 → 1336
    SnAC; Snf2-ATP coupling, chromatin remodelling complex

  4. XM_065549370.1 → XP_065405442.1  probable global transcription activator SNF2L2 isoform X4

    UniProtKB/TrEMBL
    A0A8C3INN7, A0AAJ6RFX8

  5. XM_065549367.1 → XP_065405439.1  probable global transcription activator SNF2L2 isoform X3

    UniProtKB/TrEMBL
    A0AAJ6RFX8, A0AAJ6W981

  6. XM_065549365.1 → XP_065405437.1  probable global transcription activator SNF2L2 isoform X2

    UniProtKB/TrEMBL
    A0AAJ6RFX8, A0AAJ6W8Q9

  7. XM_005296769.5 → XP_005296826.1  probable global transcription activator SNF2L2 isoform X3

    UniProtKB/TrEMBL
    A0AAJ6RFX8, A0AAJ6W981
    Conserved Domains (10) summary
    cd05516
    Location:1382 → 1488
    Bromo_SNF2L2; Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone ...
    smart00592
    Location:589 → 631
    BRK; domain in transcription and CHROMO domain helicases
    smart00573
    Location:435 → 507
    HSA; domain in helicases and associated with SANT domains
    cd00046
    Location:744 → 883
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam08430
    Location:55 → 174
    Forkhead_N; Forkhead N-terminal region
    pfam00176
    Location:727 → 1022
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:1049 → 1164
    Helicase_C; Helicase conserved C-terminal domain
    pfam08880
    Location:173 → 207
    QLQ; QLQ
    pfam11235
    Location:140 → 313
    Med25_SD1; Mediator complex subunit 25 synapsin 1
    pfam14619
    Location:1259 → 1326
    SnAC; Snf2-ATP coupling, chromatin remodelling complex

  8. XM_005296764.5 → XP_005296821.1  probable global transcription activator SNF2L2 isoform X1

    See identical proteins and their annotated locations for XP_005296821.1

    UniProtKB/TrEMBL
    A0AAJ6RFJ7, A0AAJ6RFX8
    Conserved Domains (8) summary
    cd05516
    Location:1392 → 1498
    Bromo_SNF2L2; Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone ...
    smart00573
    Location:445 → 517
    HSA; domain in helicases and associated with SANT domains
    PLN03142
    Location:730 → 1212
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    PHA03378
    Location:82 → 391
    PHA03378; EBNA-3B; Provisional
    cd18063
    Location:711 → 961
    DEXHc_SMARCA2; DEXH-box helicase domain of SMARCA2
    pfam07533
    Location:599 → 641
    BRK; BRK domain
    pfam08880
    Location:173 → 207
    QLQ
    pfam14619
    Location:1270 → 1336
    SnAC; Snf2-ATP coupling, chromatin remodelling complex

  9. XM_065549363.1 → XP_065405435.1  probable global transcription activator SNF2L2 isoform X1

    UniProtKB/TrEMBL
    A0AAJ6RFJ7, A0AAJ6RFX8

  10. XM_065549376.1 → XP_065405448.1  probable global transcription activator SNF2L2 isoform X4

    UniProtKB/TrEMBL
    A0A8C3INN7, A0AAJ6RFX8

  11. XM_065549375.1 → XP_065405447.1  probable global transcription activator SNF2L2 isoform X3

    UniProtKB/TrEMBL
    A0AAJ6RFX8, A0AAJ6W981

  12. XM_065549372.1 → XP_065405444.1  probable global transcription activator SNF2L2 isoform X4

    UniProtKB/TrEMBL
    A0A8C3INN7, A0AAJ6RFX8

  13. XM_065549371.1 → XP_065405443.1  probable global transcription activator SNF2L2 isoform X4

    UniProtKB/TrEMBL
    A0A8C3INN7, A0AAJ6RFX8

  14. XM_065549369.1 → XP_065405441.1  probable global transcription activator SNF2L2 isoform X4

    UniProtKB/TrEMBL
    A0A8C3INN7, A0AAJ6RFX8

  15. XM_065549368.1 → XP_065405440.1  probable global transcription activator SNF2L2 isoform X3

    UniProtKB/TrEMBL
    A0AAJ6RFX8, A0AAJ6W981

  16. XM_065549374.1 → XP_065405446.1  probable global transcription activator SNF2L2 isoform X2

    UniProtKB/TrEMBL
    A0AAJ6RFX8, A0AAJ6W8Q9

  17. XM_065549366.1 → XP_065405438.1  probable global transcription activator SNF2L2 isoform X3

    UniProtKB/TrEMBL
    A0AAJ6RFX8, A0AAJ6W981

  18. XM_065549364.1 → XP_065405436.1  probable global transcription activator SNF2L2 isoform X2

    UniProtKB/TrEMBL
    A0AAJ6RFX8, A0AAJ6W8Q9

  19. XM_005296766.5 → XP_005296823.1  probable global transcription activator SNF2L2 isoform X1

    See identical proteins and their annotated locations for XP_005296823.1

    UniProtKB/TrEMBL
    A0AAJ6RFJ7, A0AAJ6RFX8
    Conserved Domains (8) summary
    cd05516
    Location:1392 → 1498
    Bromo_SNF2L2; Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone ...
    smart00573
    Location:445 → 517
    HSA; domain in helicases and associated with SANT domains
    PLN03142
    Location:730 → 1212
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    PHA03378
    Location:82 → 391
    PHA03378; EBNA-3B; Provisional
    cd18063
    Location:711 → 961
    DEXHc_SMARCA2; DEXH-box helicase domain of SMARCA2
    pfam07533
    Location:599 → 641
    BRK; BRK domain
    pfam08880
    Location:173 → 207
    QLQ
    pfam14619
    Location:1270 → 1336
    SnAC; Snf2-ATP coupling, chromatin remodelling complex

  20. XM_042850631.2 → XP_042706565.1  probable global transcription activator SNF2L2 isoform X1

    UniProtKB/TrEMBL
    A0AAJ6RFJ7, A0AAJ6RFX8
    Conserved Domains (8) summary
    cd05516
    Location:1392 → 1498
    Bromo_SNF2L2; Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone ...
    smart00573
    Location:445 → 517
    HSA; domain in helicases and associated with SANT domains
    PLN03142
    Location:730 → 1212
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    PHA03378
    Location:82 → 391
    PHA03378; EBNA-3B; Provisional
    cd18063
    Location:711 → 961
    DEXHc_SMARCA2; DEXH-box helicase domain of SMARCA2
    pfam07533
    Location:599 → 641
    BRK; BRK domain
    pfam08880
    Location:173 → 207
    QLQ
    pfam14619
    Location:1270 → 1336
    SnAC; Snf2-ATP coupling, chromatin remodelling complex

  21. XM_042850632.2 → XP_042706566.1  probable global transcription activator SNF2L2 isoform X5

    UniProtKB/TrEMBL
    A0AAJ7YF72
    Conserved Domains (3) summary
    cd05516
    Location:413 → 519
    Bromo_SNF2L2; Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone ...
    PLN03142
    Location:1 → 233
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cl02556
    Location:364 → 426
    Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.

  22. XM_065549377.1 → XP_065405449.1  probable global transcription activator SNF2L2 isoform X7

    UniProtKB/TrEMBL
    A0AAJ6WTB8

  23. XM_008166000.4 → XP_008164222.1  probable global transcription activator SNF2L2 isoform X6

    UniProtKB/TrEMBL
    A0AAJ6WSW4
    Conserved Domains (1) summary
    cd05516
    Location:86 → 192
    Bromo_SNF2L2; Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone ...
Nucleotide Protein
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