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RHBDF1 rhomboid 5 homolog 1 [ Chrysemys picta bellii (western painted turtle) ]

Gene ID: 101931157, updated on 1-Aug-2024

Summary

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Gene symbol
RHBDF1
Gene description
rhomboid 5 homolog 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Chrysemys picta bellii (sub-species: bellii)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Chrysemys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2024_05 current ASM1138683v2 (GCF_011386835.1) 10 NC_088800.1 (56868014..56965146)
102 previous assembly Chrysemys_picta_bellii-3.0.3 (GCF_000241765.3) Unplaced Scaffold NW_007359871.1 (1759070..1858478)

Chromosome 10 - NC_088800.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112058830 Neighboring gene uncharacterized LOC135974031 Neighboring gene uncharacterized LOC135974033 Neighboring gene small nuclear ribonucleoprotein U11/U12 subunit 25 Neighboring gene uncharacterized LOC135974034 Neighboring gene RNA polymerase III subunit K Neighboring gene general transcription factor IIIC subunit 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of epidermal growth factor receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of protein secretion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
inactive rhomboid protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011386835.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1138683v2

Genomic

  1. NC_088800.1 Reference ASM1138683v2

    Range
    56868014..56965146
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005306147.5 → XP_005306204.2  inactive rhomboid protein 1 isoform X3

    UniProtKB/TrEMBL
    A0AAJ6RPN6

  2. XM_042861566.2 → XP_042717500.2  inactive rhomboid protein 1 isoform X1

    UniProtKB/TrEMBL
    A0AAJ7Z194

  3. XM_005306138.5 → XP_005306195.2  inactive rhomboid protein 1 isoform X1

    UniProtKB/TrEMBL
    A0AAJ7Z194

  4. XM_005306146.5 → XP_005306203.2  inactive rhomboid protein 1 isoform X2

    UniProtKB/TrEMBL
    A0AAJ6RPW4

  5. XM_042861567.2 → XP_042717501.2  inactive rhomboid protein 1 isoform X1

    UniProtKB/TrEMBL
    A0AAJ7Z194

  6. XM_065559899.1 → XP_065415971.1  inactive rhomboid protein 1 isoform X4

    UniProtKB/TrEMBL
    A0AAJ7Z194

  7. XM_065559900.1 → XP_065415972.1  inactive rhomboid protein 1 isoform X5

    UniProtKB/TrEMBL
    A0AAJ6RPN6

  8. XM_065559898.1 → XP_065415970.1  inactive rhomboid protein 1 isoform X1

    UniProtKB/TrEMBL
    A0AAJ7Z194

  9. XM_042861568.2 → XP_042717502.2  inactive rhomboid protein 1 isoform X1

    UniProtKB/TrEMBL
    A0AAJ7Z194

RNA

  1. XR_010591158.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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