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CGB_C3440W ER-associated protein catabolism-related protein, putative [ Cryptococcus gattii WM276 ]

Gene ID: 10187316, updated on 6-Jun-2024

Summary

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Gene symbol
CGB_C3440W
Gene description
ER-associated protein catabolism-related protein, putative
Primary source
FungiDB:CGB_C3440W
Locus tag
CGB_C3440W
See related
VEuPathDB:CGB_C3440W
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Cryptococcus gattii WM276 (strain: WM276, serotype: B)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex
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Genomic context

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See CGB_C3440W in Genome Data Viewer
Location:
chromosome: C
Exon count:
7
Sequence:
Chromosome: C; NC_014940.1 (727998..730451)

Chromosome C - NC_014940.1Genomic Context describing neighboring genes Neighboring gene MAP kinase kinase, putative Neighboring gene Hypothetical protein Neighboring gene Nuclear matrix protein NMP200, putative Neighboring gene ATP-dependent RNA helicase cdc28, putative

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_014940.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome variation in Cryptococcus gattii, an emerging pathogen of immunocompetent hosts. D'Souza CA, et al. mBio, 2011. PMID 21304167, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ER-associated protein catabolism-related protein, putative
XP_003192738.1
  • Similar to TIGR gene model, INSD accession AAW42211.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_014940.1 Reference assembly

    Range
    727998..730451
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003192690.1 → XP_003192738.1  ER-associated protein catabolism-related protein, putative [Cryptococcus gattii WM276]

    See identical proteins and their annotated locations for XP_003192738.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    E6R392
    Conserved Domains (4) summary
    COG5100
    Location:1 → 608
    NPL4; Nuclear pore protein [Nuclear structure]
    pfam05020
    Location:133 → 278
    zf-NPL4; NPL4 family, putative zinc binding region
    cl00155
    Location:1 → 81
    UBQ; Ubiquitin-like proteins
    cl13996
    Location:281 → 610
    MPN; Mpr1p, Pad1p N-terminal (MPN) domains
Nucleotide Protein
Heading Accession and Version

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