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SPG11 SPG11 vesicle trafficking associated, spatacsin [ Macaca fascicularis (crab-eating macaque) ]

Gene ID: 101866010, updated on 1-Aug-2024

Summary

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Gene symbol
SPG11
Gene description
SPG11 vesicle trafficking associated, spatacsin
See related
Ensembl:ENSMFAG00000001008
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca fascicularis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
44
Annotation release Status Assembly Chr Location
RS_2024_05 current T2T-MFA8v1.0 (GCF_037993035.1) 7 NC_088381.1 (21172739..21275807, complement)
102 previous assembly MFA1912RKSv2 (GCF_012559485.2) 7 NC_052261.1 (20112242..20216142, complement)

Chromosome 7 - NC_088381.1Genomic Context describing neighboring genes Neighboring gene CTD small phosphatase like 2 Neighboring gene heterogeneous nuclear ribonucleoprotein M-like Neighboring gene uncharacterized LOC135971791 Neighboring gene eukaryotic translation initiation factor 3 subunit J Neighboring gene PAT1 homolog 2 Neighboring gene beta-2-microglobulin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Substitution rate and structural divergence of 5'UTR evolution: comparative analysis between human and cynomolgus monkey cDNAs. Osada N, et al. Mol Biol Evol, 2005 Oct. PMID 15944441

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in axo-dendritic transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in axon extension IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in dendrite IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
spatacsin
Names
SPG11, spatacsin vesicle trafficking associated
spastic paraplegia 11 (autosomal recessive)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037993035.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T2T-MFA8v1.0

Genomic

  1. NC_088381.1 Reference T2T-MFA8v1.0

    Range
    21172739..21275807 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065547864.1 → XP_065403936.1  spatacsin isoform X6

    UniProtKB/TrEMBL
    A0A2K5U8W3

  2. XM_065547861.1 → XP_065403933.1  spatacsin isoform X3

    UniProtKB/TrEMBL
    G7PB83

  3. XM_045395363.2 → XP_045251298.2  spatacsin isoform X2

    UniProtKB/TrEMBL
    G7PB83

  4. XM_045395364.2 → XP_045251299.2  spatacsin isoform X4

    UniProtKB/TrEMBL
    G7PB83

  5. XM_005559400.4 → XP_005559457.4  spatacsin isoform X1

    UniProtKB/TrEMBL
    G7PB83

  6. XM_065547865.1 → XP_065403937.1  spatacsin isoform X7

    UniProtKB/TrEMBL
    A0A2K5U8W3

  7. XM_065547862.1 → XP_065403934.1  spatacsin isoform X5

    UniProtKB/TrEMBL
    A0A2K5U8U9

  8. XM_065547863.1 → XP_065403935.1  spatacsin isoform X5

    UniProtKB/TrEMBL
    A0A2K5U8U9

  9. XM_045395366.2 → XP_045251301.2  spatacsin isoform X5

    UniProtKB/TrEMBL
    A0A2K5U8U9

RNA

  1. XR_010588041.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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