U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CGB_H3700W DNA ligase, putative [ Cryptococcus gattii WM276 ]

Gene ID: 10185600, updated on 6-Jun-2024

Summary

Go to the top of the page Help
Gene symbol
CGB_H3700W
Gene description
DNA ligase, putative
Primary source
FungiDB:CGB_H3700W
Locus tag
CGB_H3700W
See related
VEuPathDB:CGB_H3700W
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Cryptococcus gattii WM276 (strain: WM276, serotype: B)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CGB_H3700W in Genome Data Viewer
Location:
chromosome: H
Exon count:
15
Sequence:
Chromosome: H; NC_014945.1 (811250..814417)

Chromosome H - NC_014945.1Genomic Context describing neighboring genes Neighboring gene Hypothetical Protein Neighboring gene uncharacterized protein Neighboring gene signal transduction-related protein, putative Neighboring gene cytosine-purine permease, putative

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_014945.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genome variation in Cryptococcus gattii, an emerging pathogen of immunocompetent hosts. D'Souza CA, et al. mBio, 2011. PMID 21304167, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA ligase (ATP) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in Okazaki fragment processing involved in mitotic DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lagging strand elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
DNA ligase, putative
XP_003195763.1
  • Similar to TIGR gene model, INSD accession AAW45295.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_014945.1 Reference assembly

    Range
    811250..814417
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003195715.1 → XP_003195763.1  DNA ligase, putative [Cryptococcus gattii WM276]

    See identical proteins and their annotated locations for XP_003195763.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    E6RB09
    Conserved Domains (4) summary
    cd07969
    Location:642 → 785
    OBF_DNA_ligase_I; The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase I is a DNA-binding module that is part of the catalytic core unit
    cd07900
    Location:418 → 637
    Adenylation_DNA_ligase_I_Euk; Adenylation domain of eukaryotic DNA Ligase I
    PLN03113
    Location:30 → 786
    PLN03113; DNA ligase 1; Provisional
    pfam04675
    Location:179 → 356
    DNA_ligase_A_N; DNA ligase N terminus
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases