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Cachd1 cache domain containing 1 [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101843113, updated on 8-Mar-2024

Summary

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Gene symbol
Cachd1
Gene description
cache domain containing 1
See related
EnsemblRapid:ENSMAUG00000000758
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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See Cachd1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429197.1 (38898971..39111496, complement)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801836.1 (384607..597010)

NW_024429197.1Genomic Context describing neighboring genes Neighboring gene Janus kinase 1 Neighboring gene ribonucleoprotein, PTB binding 2 Neighboring gene uncharacterized LOC121144009 Neighboring gene 40S ribosomal protein S10-like Neighboring gene U1 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables voltage-gated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of voltage-gated calcium channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
VWFA and cache domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429197.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    38898971..39111496 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005086633.4 → XP_005086690.1  VWFA and cache domain-containing protein 1

    UniProtKB/TrEMBL
    A0A1U7RDU4
    Related
    ENSMAUP00000000985.1, ENSMAUT00000001016.2
    Conserved Domains (3) summary
    pfam02743
    Location:470 → 537
    Cache_1; Cache domain
    pfam08399
    Location:103 → 218
    VWA_N; VWA N-terminal
    cl00057
    Location:227 → 422
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
Nucleotide Protein
Heading Accession and Version

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