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Nop56 NOP56 ribonucleoprotein [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101840632, updated on 11-Apr-2024

Summary

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Gene symbol
Nop56
Gene description
NOP56 ribonucleoprotein
See related
EnsemblRapid:ENSMAUG00000021793
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429189.1 (96807577..96812582)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801618.1 (10066992..10071985)

NW_024429189.1Genomic Context describing neighboring genes Neighboring gene small nuclear ribonucleoprotein polypeptides B and B1 Neighboring gene transmembrane channel like 2 Neighboring gene uncharacterized LOC121140521 Neighboring gene small nucleolar RNA SNORD110 Neighboring gene small nucleolar RNA SNORA51 Neighboring gene small nucleolar RNA SNORD86 Neighboring gene small nucleolar RNA SNORD56 Neighboring gene small nucleolar RNA SNORD57 Neighboring gene isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta Neighboring gene EBF family member 4 Neighboring gene dynein light chain 1, cytoplasmic-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables snoRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of box C/D methylation guide snoRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nucleolar protein 56

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429189.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    96807577..96812582
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013112375.3 → XP_012967829.1  nucleolar protein 56

    UniProtKB/TrEMBL
    A0A1U8BX22
    Related
    ENSMAUP00000025176.2, ENSMAUT00000029198.2
    Conserved Domains (4) summary
    smart00931
    Location:168 → 219
    NOSIC; NOSIC (NUC001) domain
    COG1498
    Location:48 → 416
    SIK1; RNA processing factor Prp31, contains Nop domain [Translation, ribosomal structure and biogenesis]
    pfam08070
    Location:515 → 571
    DTHCT; DTHCT (NUC029) region
    pfam08156
    Location:5 → 70
    NOP5NT; NOP5NT (NUC127) domain

RNA

  1. XR_001196397.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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