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Efnb3 ephrin B3 [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101834610, updated on 8-Mar-2024

Summary

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Gene symbol
Efnb3
Gene description
ephrin B3
See related
EnsemblRapid:ENSMAUG00000035185
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429191.1 (48421544..48428515, complement)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801614.1 (7589321..7595294)

NW_024429191.1Genomic Context describing neighboring genes Neighboring gene lysine demethylase 6B Neighboring gene dynein axonemal heavy chain 2 Neighboring gene WD repeat containing antisense to TP53 Neighboring gene tumor protein p53

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ephrin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ephrin receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ephrin-B3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429191.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    48421544..48428515 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013111414.3 → XP_012966868.2  ephrin-B3 isoform X3

    UniProtKB/TrEMBL
    A0A1U8BTL5
    Conserved Domains (1) summary
    cl19115
    Location:16 → 155
    Cupredoxin; Cupredoxin superfamily

  2. XM_040748949.1 → XP_040604883.1  ephrin-B3 isoform X1

    Related
    ENSMAUP00000029308.1, ENSMAUT00000058106.1
    Conserved Domains (1) summary
    cl19115
    Location:49 → 188
    Cupredoxin; Cupredoxin superfamily

  3. XM_005067551.4 → XP_005067608.1  ephrin-B3 isoform X2

    UniProtKB/TrEMBL
    A0A1U7Q8F6
    Conserved Domains (1) summary
    cl19115
    Location:29 → 168
    Cupredoxin; Cupredoxin superfamily
Nucleotide Protein
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