U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Pdzd4 PDZ domain containing 4 [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101833654, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
Pdzd4
Gene description
PDZ domain containing 4
See related
EnsemblRapid:ENSMAUG00000000466
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429188.1 (118261872..118297307, complement)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801845.1 (727661..763281)

NW_024429188.1Genomic Context describing neighboring genes Neighboring gene isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit gamma Neighboring gene signal sequence receptor subunit 4 Neighboring gene L1 cell adhesion molecule Neighboring gene arginine vasopressin receptor 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
PDZ domain-containing protein 4

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429188.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    118261872..118297307 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013125894.3 → XP_012981348.1  PDZ domain-containing protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A1U8CZQ2, A0A3Q0CGJ6
    Conserved Domains (1) summary
    cd00992
    Location:139 → 221
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  2. XM_013125896.3 → XP_012981350.1  PDZ domain-containing protein 4 isoform X5

    UniProtKB/TrEMBL
    A0A1U8CSA9, A0A3Q0CGJ6

  3. XM_013125893.3 → XP_012981347.1  PDZ domain-containing protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A1U8CPH4, A0A3Q0CGJ6
    Related
    ENSMAUP00000000559.2, ENSMAUT00000000590.2
    Conserved Domains (1) summary
    cd00992
    Location:145 → 227
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  4. XM_005086940.4 → XP_005086997.1  PDZ domain-containing protein 4 isoform X4

    UniProtKB/TrEMBL
    A0A1U7R6C2, A0A3Q0CGJ6
    Conserved Domains (1) summary
    cd00992
    Location:130 → 212
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  5. XM_005086939.4 → XP_005086996.1  PDZ domain-containing protein 4 isoform X3

    UniProtKB/TrEMBL
    A0A1U7RGQ8, A0A3Q0CGJ6
    Related
    ENSMAUP00000043337.1, ENSMAUT00000073462.1
    Conserved Domains (1) summary
    cd00992
    Location:136 → 218
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  6. XM_040744768.1 → XP_040600702.1  PDZ domain-containing protein 4 isoform X7

    UniProtKB/TrEMBL
    A0A3Q0CGJ6
    Related
    ENSMAUP00000032926.1, ENSMAUT00000043748.1

  7. XM_005086941.4 → XP_005086998.1  PDZ domain-containing protein 4 isoform X6

    UniProtKB/TrEMBL
    A0A1U7QVP2, A0A3Q0CGJ6
    Related
    ENSMAUP00000060127.1, ENSMAUT00000036200.1
    Conserved Domains (1) summary
    cd00992
    Location:19 → 103
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.