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Col5a1 collagen type V alpha 1 chain [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101830390, updated on 8-Mar-2024

Summary

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Gene symbol
Col5a1
Gene description
collagen type V alpha 1 chain
See related
EnsemblRapid:ENSMAUG00000011031
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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See Col5a1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
69
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429189.1 (3793253..3944609, complement)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801794.1 (1151733..1303077)

NW_024429189.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110343790 Neighboring gene ficolin-2 Neighboring gene retinoid X receptor alpha Neighboring gene U6atac minor spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-1(V) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429189.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    3793253..3944609 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040745149.1 → XP_040601083.1  collagen alpha-1(V) chain isoform X2

    UniProtKB/TrEMBL
    A0A3Q0DFI3
    Conserved Domains (2) summary
    smart00038
    Location:1610 → 1854
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:41 → 230
    TSPN; Thrombospondin N-terminal -like domains

  2. XM_040745148.1 → XP_040601082.1  collagen alpha-1(V) chain isoform X1

    UniProtKB/TrEMBL
    A0A3Q0DFI3
    Related
    ENSMAUP00000010225.2, ENSMAUT00000014093.2
    Conserved Domains (2) summary
    smart00038
    Location:1610 → 1854
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:41 → 230
    TSPN; Thrombospondin N-terminal -like domains

  3. XM_013124722.3 → XP_012980176.1  collagen alpha-1(V) chain isoform X4

    UniProtKB/TrEMBL
    A0A1U8CKZ6, A0A3Q0DG87
    Related
    ENSMAUP00000010205.2, ENSMAUT00000014073.2
    Conserved Domains (3) summary
    pfam01391
    Location:873 → 932
    Collagen; Collagen triple helix repeat (20 copies)
    smart00210
    Location:41 → 230
    TSPN; Thrombospondin N-terminal -like domains
    pfam01410
    Location:1612 → 1838
    COLFI; Fibrillar collagen C-terminal domain

  4. XM_005085407.4 → XP_005085464.1  collagen alpha-1(V) chain isoform X3

    UniProtKB/TrEMBL
    A0A1U7REC1, A0A3Q0DG87
    Related
    ENSMAUP00000049213.1, ENSMAUT00000073211.1
    Conserved Domains (3) summary
    pfam01391
    Location:873 → 932
    Collagen; Collagen triple helix repeat (20 copies)
    smart00210
    Location:41 → 230
    TSPN; Thrombospondin N-terminal -like domains
    pfam01410
    Location:1612 → 1838
    COLFI; Fibrillar collagen C-terminal domain

  5. XM_013124723.3 → XP_012980177.1  collagen alpha-1(V) chain isoform X5

    UniProtKB/TrEMBL
    A0A1U8CL81, A0A3Q0DFI3
    Related
    ENSMAUP00000010250.2, ENSMAUT00000014118.2
    Conserved Domains (3) summary
    pfam01391
    Location:873 → 932
    Collagen; Collagen triple helix repeat (20 copies)
    smart00210
    Location:41 → 230
    TSPN; Thrombospondin N-terminal -like domains
    cl02436
    Location:1612 → 1712
    COLFI; Fibrillar collagen C-terminal domain
Nucleotide Protein
Heading Accession and Version

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