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Trim6 tripartite motif containing 6 [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101827300, updated on 8-Mar-2024

Summary

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Gene symbol
Trim6
Gene description
tripartite motif containing 6
See related
EnsemblRapid:ENSMAUG00000002130
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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See Trim6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429182.1 (94320680..94335479, complement)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801864.1 (465737..494202)

NW_024429182.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene tripartite motif-containing protein 34A-like Neighboring gene olfactory receptor 52B6 Neighboring gene olfactory receptor 52H1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tripartite motif-containing protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429182.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    94320680..94335479 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040757281.1 → XP_040613215.1  tripartite motif-containing protein 6

    Related
    ENSMAUP00000002518.1, ENSMAUT00000002840.2
    Conserved Domains (4) summary
    PRK12704
    Location:131 → 257
    PRK12704; phosphodiesterase; Provisional
    cd15823
    Location:299 → 486
    SPRY_PRY_TRIM6; PRY/SPRY domain in tripartite motif-binding protein 6 (TRIM6), also known as RING finger protein 89 (RNF89)
    cd16591
    Location:12 → 61
    RING-HC_TRIM5_like-C-IV; RING finger, HC subclass, found in tripartite motif-containing proteins TRIM5, TRIM6, TRIM22, TRIM34 and similar proteins
    cd19761
    Location:96 → 134
    Bbox2_TRIM5-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins, TRIM5, TRIM6, TRIM22, TRIM34, TRIM38 and similar proteins

  2. XM_040757307.1 → XP_040613241.1  tripartite motif-containing protein 6

    Conserved Domains (4) summary
    PRK12704
    Location:131 → 257
    PRK12704; phosphodiesterase; Provisional
    cd15823
    Location:299 → 486
    SPRY_PRY_TRIM6; PRY/SPRY domain in tripartite motif-binding protein 6 (TRIM6), also known as RING finger protein 89 (RNF89)
    cd16591
    Location:12 → 61
    RING-HC_TRIM5_like-C-IV; RING finger, HC subclass, found in tripartite motif-containing proteins TRIM5, TRIM6, TRIM22, TRIM34 and similar proteins
    cd19761
    Location:96 → 134
    Bbox2_TRIM5-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins, TRIM5, TRIM6, TRIM22, TRIM34, TRIM38 and similar proteins

  3. XM_021223711.2 → XP_021079370.2  tripartite motif-containing protein 6

    Conserved Domains (4) summary
    PRK12704
    Location:131 → 257
    PRK12704; phosphodiesterase; Provisional
    cd15823
    Location:299 → 486
    SPRY_PRY_TRIM6; PRY/SPRY domain in tripartite motif-binding protein 6 (TRIM6), also known as RING finger protein 89 (RNF89)
    cd16591
    Location:12 → 61
    RING-HC_TRIM5_like-C-IV; RING finger, HC subclass, found in tripartite motif-containing proteins TRIM5, TRIM6, TRIM22, TRIM34 and similar proteins
    cd19761
    Location:96 → 134
    Bbox2_TRIM5-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins, TRIM5, TRIM6, TRIM22, TRIM34, TRIM38 and similar proteins

  4. XM_040757300.1 → XP_040613234.1  tripartite motif-containing protein 6

    Conserved Domains (4) summary
    PRK12704
    Location:131 → 257
    PRK12704; phosphodiesterase; Provisional
    cd15823
    Location:299 → 486
    SPRY_PRY_TRIM6; PRY/SPRY domain in tripartite motif-binding protein 6 (TRIM6), also known as RING finger protein 89 (RNF89)
    cd16591
    Location:12 → 61
    RING-HC_TRIM5_like-C-IV; RING finger, HC subclass, found in tripartite motif-containing proteins TRIM5, TRIM6, TRIM22, TRIM34 and similar proteins
    cd19761
    Location:96 → 134
    Bbox2_TRIM5-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins, TRIM5, TRIM6, TRIM22, TRIM34, TRIM38 and similar proteins

  5. XM_040757292.1 → XP_040613226.1  tripartite motif-containing protein 6

    Conserved Domains (4) summary
    PRK12704
    Location:131 → 257
    PRK12704; phosphodiesterase; Provisional
    cd15823
    Location:299 → 486
    SPRY_PRY_TRIM6; PRY/SPRY domain in tripartite motif-binding protein 6 (TRIM6), also known as RING finger protein 89 (RNF89)
    cd16591
    Location:12 → 61
    RING-HC_TRIM5_like-C-IV; RING finger, HC subclass, found in tripartite motif-containing proteins TRIM5, TRIM6, TRIM22, TRIM34 and similar proteins
    cd19761
    Location:96 → 134
    Bbox2_TRIM5-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins, TRIM5, TRIM6, TRIM22, TRIM34, TRIM38 and similar proteins
Nucleotide Protein
Heading Accession and Version

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