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Vim vimentin [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101824289, updated on 8-Mar-2024

Summary

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Gene symbol
Vim
Gene description
vimentin
See related
EnsemblRapid:ENSMAUG00000004577
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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See Vim in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429196.1 (19693252..19701569, complement)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801715.1 (5389004..5397326)

NW_024429196.1Genomic Context describing neighboring genes Neighboring gene 3-hydroxyacyl-CoA dehydratase 1 Neighboring gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 Neighboring gene U6 spliceosomal RNA Neighboring gene transcription elongation factor 1 homolog Neighboring gene tRNA aspartic acid methyltransferase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing and development of an expression microarray platform for liver infection in adenovirus type 5-infected Syrian golden hamsters. Ying B, et al. Virology, 2015 Nov. PMID 26319212, Free PMC Article
  2. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intermediate filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vimentin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429196.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    19693252..19701569 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005081261.4 → XP_005081318.1  vimentin

    UniProtKB/Swiss-Prot
    P02544
    UniProtKB/TrEMBL
    A0A1U7QL88
    Related
    ENSMAUP00000003899.1, ENSMAUT00000005690.2
    Conserved Domains (3) summary
    pfam00038
    Location:102 → 410
    Filament; Intermediate filament protein
    pfam04732
    Location:14 → 101
    Filament_head; Intermediate filament head (DNA binding) region
    pfam15112
    Location:153 → 257
    DUF4559; Domain of unknown function (DUF4559)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P02544.2 GenPept UniProtKB/Swiss-Prot:P02544

Gene LinkOut

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