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LRP6 LDL receptor related protein 6 [ Ficedula albicollis (Collared flycatcher) ]

Gene ID: 101820326, updated on 3-Aug-2024

Summary

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Gene symbol
LRP6
Gene description
LDL receptor related protein 6
See related
Ensembl:ENSFALG00000002607
Gene type
protein coding
RefSeq status
MODEL
Organism
Ficedula albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Muscicapidae; Ficedula
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1A
Exon count:
22
Annotation release Status Assembly Chr Location
101 current FicAlb1.5 (GCF_000247815.1) 1A NC_021672.1 (63159656..63262836, complement)

Chromosome 1A - NC_021672.1Genomic Context describing neighboring genes Neighboring gene DNA/RNA-binding protein KIN17 pseudogene Neighboring gene ETS variant transcription factor 6 Neighboring gene MANSC domain containing 1 Neighboring gene BLOC-1 related complex subunit 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_021672.1 Chromosome 1A Reference FicAlb1.5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Wnt signaling pathway involved in somitogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in receptor-mediated endocytosis involved in cholesterol transport IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
low-density lipoprotein receptor-related protein 6
Names
low density lipoprotein receptor-related protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ficedula albicollis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference FicAlb1.5 Primary Assembly

Genomic

  1. NC_021672.1 Reference FicAlb1.5 Primary Assembly

    Range
    63159656..63262836 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005040112.2 → XP_005040169.1  low-density lipoprotein receptor-related protein 6

    UniProtKB/TrEMBL
    U3JIW2
    Related
    ENSFALP00000002716.1, ENSFALT00000002728.2
    Conserved Domains (4) summary
    smart00135
    Location:246 → 286
    LY; Low-density lipoprotein-receptor YWTD domain
    cd00112
    Location:1161 → 1195
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
    pfam00058
    Location:1 → 39
    Ldl_recept_b; Low-density lipoprotein receptor repeat class B
    pfam14670
    Location:135 → 172
    FXa_inhibition; Coagulation Factor Xa inhibitory site
Nucleotide Protein
Heading Accession and Version

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