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NPAS4 neuronal PAS domain protein 4 [ Ficedula albicollis (Collared flycatcher) ]

Gene ID: 101818971, updated on 3-Aug-2024

Summary

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Gene symbol
NPAS4
Gene description
neuronal PAS domain protein 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Ficedula albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Muscicapidae; Ficedula
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
7
Annotation release Status Assembly Chr Location
101 current FicAlb1.5 (GCF_000247815.1) 3 NC_021674.1 (7332480..7335045, complement)

Chromosome 3 - NC_021674.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 121-like Neighboring gene ribosomal RNA processing 36 Neighboring gene kelch domain containing 3 Neighboring gene protein phosphatase 2 regulatory subunit B'delta Neighboring gene male-enhanced antigen 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_021674.1 Chromosome 3 Reference FicAlb1.5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neuronal PAS domain-containing protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ficedula albicollis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference FicAlb1.5 Primary Assembly

Genomic

  1. NC_021674.1 Reference FicAlb1.5 Primary Assembly

    Range
    7332480..7335045 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005042811.1 → XP_005042868.1  neuronal PAS domain-containing protein 4

    Conserved Domains (2) summary
    COG2202
    Location:113 → 329
    PAS; PAS domain [Signal transduction mechanisms]
    cd00130
    Location:240 → 335
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
Nucleotide Protein
Heading Accession and Version

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