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SOX11 SRY-box transcription factor 11 [ Ficedula albicollis (Collared flycatcher) ]

Gene ID: 101808019, updated on 3-Aug-2024

Summary

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Gene symbol
SOX11
Gene description
SRY-box transcription factor 11
See related
Ensembl:ENSFALG00000014554
Gene type
protein coding
RefSeq status
MODEL
Organism
Ficedula albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Muscicapidae; Ficedula
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
1
Annotation release Status Assembly Chr Location
101 current FicAlb1.5 (GCF_000247815.1) 3 NC_021674.1 (99313904..99315234)

Chromosome 3 - NC_021674.1Genomic Context describing neighboring genes Neighboring gene collectin subfamily member 11 Neighboring gene ribosomal protein S7 Neighboring gene another transcription unit protein Neighboring gene cytidine/uridine monophosphate kinase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_021674.1 Chromosome 3 Reference FicAlb1.5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor SOX-11
Names
SRY (sex determining region Y)-box 11
SRY-box 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ficedula albicollis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference FicAlb1.5 Primary Assembly

Genomic

  1. NC_021674.1 Reference FicAlb1.5 Primary Assembly

    Range
    99313904..99315234
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005044226.1 → XP_005044283.1  transcription factor SOX-11

    UniProtKB/TrEMBL
    U3KJG5
    Related
    ENSFALP00000015169.1, ENSFALT00000015234.2
    Conserved Domains (1) summary
    cd01388
    Location:48 → 119
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
Nucleotide Protein
Heading Accession and Version

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