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PRDM4 PR/SET domain 4 [ Anas platyrhynchos (mallard) ]

Gene ID: 101803815, updated on 8-Mar-2024

Summary

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Gene symbol
PRDM4
Gene description
PR/SET domain 4
See related
EnsemblRapid:ENSAPLG00030023266
Gene type
protein coding
RefSeq status
MODEL
Organism
Anas platyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
104 current ZJU1.0 (GCF_015476345.1) 1 NC_051772.1 (56254224..56269062)
103 previous assembly IASCAAS_PekingDuck_PBH1.5 (GCF_003850225.1) 1 NC_040046.1 (147015211..147031737, complement)

Chromosome 1 - NC_051772.1Genomic Context describing neighboring genes Neighboring gene RNA 2',3'-cyclic phosphate and 5'-OH ligase Neighboring gene achaete-scute family bHLH transcription factor 4 Neighboring gene PWP1 homolog, endonuclein Neighboring gene ankyrin repeat and BTB domain containing 3 Neighboring gene uncharacterized LOC119717368

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone deacetylase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone methyltransferase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PR domain zinc finger protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZJU1.0 Primary Assembly

Genomic

  1. NC_051772.1 Reference ZJU1.0 Primary Assembly

    Range
    56254224..56269062
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038185107.1 → XP_038041035.1  PR domain zinc finger protein 4 isoform X1

    UniProtKB/TrEMBL
    U3IQP9
    Related
    ENSAPLP00030039067.1, ENSAPLT00030060888.1
    Conserved Domains (4) summary
    sd00017
    Location:623 → 643
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam18445
    Location:361 → 398
    zf_PR_Knuckle; PR zinc knuckle motif
    cd19189
    Location:401 → 540
    PR-SET_PRDM4; PR-SET domain found in PR domain zinc finger protein 4 (PRDM4) and similar proteins
    pfam13465
    Location:635 → 660
    zf-H2C2_2; Zinc-finger double domain

  2. XM_038185114.1 → XP_038041042.1  PR domain zinc finger protein 4 isoform X1

    UniProtKB/TrEMBL
    U3IQP9
    Conserved Domains (4) summary
    sd00017
    Location:623 → 643
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam18445
    Location:361 → 398
    zf_PR_Knuckle; PR zinc knuckle motif
    cd19189
    Location:401 → 540
    PR-SET_PRDM4; PR-SET domain found in PR domain zinc finger protein 4 (PRDM4) and similar proteins
    pfam13465
    Location:635 → 660
    zf-H2C2_2; Zinc-finger double domain

  3. XM_038185118.1 → XP_038041046.1  PR domain zinc finger protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A8B9TX22, U3IQP9
    Related
    ENSAPLP00030039035.1, ENSAPLT00030060829.1
    Conserved Domains (4) summary
    sd00017
    Location:616 → 636
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam18445
    Location:361 → 398
    zf_PR_Knuckle; PR zinc knuckle motif
    cd19189
    Location:401 → 533
    PR-SET_PRDM4; PR-SET domain found in PR domain zinc finger protein 4 (PRDM4) and similar proteins
    pfam13465
    Location:628 → 653
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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