U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CHD1 chromodomain helicase DNA binding protein 1 [ Anas platyrhynchos (mallard) ]

Gene ID: 101801287, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
CHD1
Gene description
chromodomain helicase DNA binding protein 1
See related
EnsemblRapid:ENSAPLG00030022518
Gene type
protein coding
RefSeq status
MODEL
Organism
Anas platyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
Also known as
CHD1Z
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Z
Exon count:
37
Annotation release Status Assembly Chr Location
104 current ZJU1.0 (GCF_015476345.1) Z NC_051804.1 (56457469..56509909, complement)
103 previous assembly IASCAAS_PekingDuck_PBH1.5 (GCF_003850225.1) Z NC_040075.1 (52077384..52126717, complement)

Chromosome Z - NC_051804.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113840465 Neighboring gene serine/threonine-protein kinase RIO2 Neighboring gene repulsive guidance molecule BMP co-receptor b Neighboring gene U1 spliceosomal RNA Neighboring gene family with sequence similarity 174 member A

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
chromodomain-helicase-DNA-binding protein 1
Names
chromo-helicase-DNA binding protein
chromodomain helicase DNA binding protein 1-Z

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZJU1.0 Primary Assembly

Genomic

  1. NC_051804.1 Reference ZJU1.0 Primary Assembly

    Range
    56457469..56509909 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038170911.1 → XP_038026839.1  chromodomain-helicase-DNA-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8B9SUF4
    Related
    ENSAPLP00030037899.1, ENSAPLT00030058837.1
    Conserved Domains (7) summary
    PLN03142
    Location:461 → 997
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    TIGR01642
    Location:1639 → 1758
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    cd18661
    Location:384 → 440
    CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cd18666
    Location:267 → 351
    CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    pfam13907
    Location:1498 → 1588
    DUF4208; Domain of unknown function (DUF4208)
    pfam18375
    Location:1121 → 1207
    CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1
    cl28899
    Location:457 → 694
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

  2. XM_038170912.1 → XP_038026840.1  chromodomain-helicase-DNA-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8B9STG1
    Related
    ENSAPLP00030038079.1, ENSAPLT00030059130.1
    Conserved Domains (7) summary
    PLN03142
    Location:461 → 997
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    TIGR01642
    Location:1551 → 1670
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    cd18661
    Location:384 → 440
    CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cd18666
    Location:267 → 351
    CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    pfam13907
    Location:1410 → 1500
    DUF4208; Domain of unknown function (DUF4208)
    pfam18375
    Location:1121 → 1207
    CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1
    cl28899
    Location:457 → 694
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.