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KDM2A lysine demethylase 2A [ Anas platyrhynchos (mallard) ]

Gene ID: 101795359, updated on 8-Mar-2024

Summary

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Gene symbol
KDM2A
Gene description
lysine demethylase 2A
Locus tag
Anapl_07262
See related
EnsemblRapid:ENSAPLG00030027268
Gene type
protein coding
RefSeq status
MODEL
Organism
Anas platyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
Orthologs
human mouse all
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Genomic context

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See KDM2A in Genome Data Viewer
Location:
chromosome: 5
Exon count:
23
Annotation release Status Assembly Chr Location
104 current ZJU1.0 (GCF_015476345.1) 5 NC_051776.1 (30504979..30543521)
103 previous assembly IASCAAS_PekingDuck_PBH1.5 (GCF_003850225.1) 5 NC_040050.1 (34045746..34083437)

Chromosome 5 - NC_051776.1Genomic Context describing neighboring genes Neighboring gene mas-related G-protein coupled receptor member H Neighboring gene ras homolog family member D Neighboring gene G protein-coupled receptor kinase 2 Neighboring gene ankyrin repeat domain 13D

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein demethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysine-specific demethylase 2A
Names
Rho-related GTP-binding protein RhoD
lysine (K)-specific demethylase 2A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZJU1.0 Primary Assembly

Genomic

  1. NC_051776.1 Reference ZJU1.0 Primary Assembly

    Range
    30504979..30543521
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038180643.1 → XP_038036571.1  lysine-specific demethylase 2A isoform X1

    UniProtKB/TrEMBL
    U3I7C5
    Related
    ENSAPLP00030043686.1, ENSAPLT00030071292.1
    Conserved Domains (9) summary
    cd09293
    Location:1041 → 1245
    AMN1; Antagonist of mitotic exit network protein 1
    smart00558
    Location:189 → 260
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    sd00034
    Location:1040 → 1064
    LRR_AMN1; leucine-rich repeat [structural motif]
    cd15643
    Location:662 → 718
    PHD_KDM2A; PHD finger found in Lysine-specific demethylase 2A (KDM2A)
    pfam02008
    Location:619 → 652
    zf-CXXC; CXXC zinc finger domain
    pfam12937
    Location:1006 → 1044
    F-box-like
    pfam17811
    Location:341 → 376
    JHD; Jumonji helical domain
    cd21784
    Location:494 → 561
    CTD_KDM2A; C-terminal domain found in Lysine-specific demethylase 2A
    cl40423
    Location:236 → 336
    cupin_RmlC-like; RmlC-like cupin superfamily

  2. XM_038180646.1 → XP_038036574.1  lysine-specific demethylase 2A isoform X4

    UniProtKB/TrEMBL
    U3I7C5
    Related
    ENSAPLP00030043717.1, ENSAPLT00030071388.1
    Conserved Domains (9) summary
    cd09293
    Location:974 → 1178
    AMN1; Antagonist of mitotic exit network protein 1
    smart00558
    Location:189 → 260
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    sd00034
    Location:973 → 997
    LRR_AMN1; leucine-rich repeat [structural motif]
    cd15643
    Location:662 → 718
    PHD_KDM2A; PHD finger found in Lysine-specific demethylase 2A (KDM2A)
    pfam02008
    Location:619 → 652
    zf-CXXC; CXXC zinc finger domain
    pfam12937
    Location:939 → 977
    F-box-like
    pfam17811
    Location:341 → 376
    JHD; Jumonji helical domain
    cd21784
    Location:494 → 561
    CTD_KDM2A; C-terminal domain found in Lysine-specific demethylase 2A
    cl40423
    Location:236 → 336
    cupin_RmlC-like; RmlC-like cupin superfamily

  3. XM_038180644.1 → XP_038036572.1  lysine-specific demethylase 2A isoform X2

    UniProtKB/TrEMBL
    U3I7C5
    Conserved Domains (9) summary
    cd09293
    Location:1040 → 1244
    AMN1; Antagonist of mitotic exit network protein 1
    smart00558
    Location:188 → 259
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    sd00034
    Location:1039 → 1063
    LRR_AMN1; leucine-rich repeat [structural motif]
    cd15643
    Location:661 → 717
    PHD_KDM2A; PHD finger found in Lysine-specific demethylase 2A (KDM2A)
    pfam02008
    Location:618 → 651
    zf-CXXC; CXXC zinc finger domain
    pfam12937
    Location:1005 → 1043
    F-box-like
    pfam17811
    Location:340 → 375
    JHD; Jumonji helical domain
    cd21784
    Location:493 → 560
    CTD_KDM2A; C-terminal domain found in Lysine-specific demethylase 2A
    cl40423
    Location:235 → 335
    cupin_RmlC-like; RmlC-like cupin superfamily

  4. XM_038180645.1 → XP_038036573.1  lysine-specific demethylase 2A isoform X3

    UniProtKB/TrEMBL
    U3I7C5
    Conserved Domains (9) summary
    cd09293
    Location:1004 → 1208
    AMN1; Antagonist of mitotic exit network protein 1
    smart00558
    Location:152 → 223
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    sd00034
    Location:1003 → 1027
    LRR_AMN1; leucine-rich repeat [structural motif]
    cd15643
    Location:625 → 681
    PHD_KDM2A; PHD finger found in Lysine-specific demethylase 2A (KDM2A)
    pfam02008
    Location:582 → 615
    zf-CXXC; CXXC zinc finger domain
    pfam12937
    Location:969 → 1007
    F-box-like
    pfam17811
    Location:304 → 339
    JHD; Jumonji helical domain
    cd21784
    Location:457 → 524
    CTD_KDM2A; C-terminal domain found in Lysine-specific demethylase 2A
    cl40423
    Location:199 → 299
    cupin_RmlC-like; RmlC-like cupin superfamily
Nucleotide Protein
Heading Accession and Version

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