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LRMDA leucine rich melanocyte differentiation associated [ Anas platyrhynchos (mallard) ]

Gene ID: 101791915, updated on 8-Mar-2024

Summary

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Gene symbol
LRMDA
Gene description
leucine rich melanocyte differentiation associated
Locus tag
Anapl_00160
Gene type
protein coding
RefSeq status
MODEL
Organism
Anas platyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
Orthologs
human mouse all
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Genomic context

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See LRMDA in Genome Data Viewer
Location:
chromosome: 6
Exon count:
15
Annotation release Status Assembly Chr Location
104 current ZJU1.0 (GCF_015476345.1) 6 NC_051777.1 (13929493..14632627, complement)
103 previous assembly IASCAAS_PekingDuck_PBH1.5 (GCF_003850225.1) 6 NC_040051.1 (23197831..23897645)

Chromosome 6 - NC_051777.1Genomic Context describing neighboring genes Neighboring gene discs large MAGUK scaffold protein 5 Neighboring gene potassium calcium-activated channel subfamily M alpha 1 Neighboring gene uncharacterized LOC119717287 Neighboring gene uncharacterized LOC119717288 Neighboring gene uncharacterized LOC106015802 Neighboring gene zinc finger protein 503

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in melanocyte differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich melanocyte differentiation-associated protein
Names
Leucine-rich repeat-containing protein C10orf11-like protein
leucine-rich repeat-containing protein C10orf11 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZJU1.0 Primary Assembly

Genomic

  1. NC_051777.1 Reference ZJU1.0 Primary Assembly

    Range
    13929493..14632627 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038180953.1 → XP_038036881.1  leucine-rich melanocyte differentiation-associated protein isoform X4

    UniProtKB/TrEMBL
    A0A8B9TGT2, U3IZV4
    Conserved Domains (1) summary
    pfam14580
    Location:114 → 194
    LRR_9; Leucine-rich repeat

  2. XM_027460614.2 → XP_027316415.1  leucine-rich melanocyte differentiation-associated protein isoform X8

  3. XM_038180956.1 → XP_038036884.1  leucine-rich melanocyte differentiation-associated protein isoform X7

    UniProtKB/TrEMBL
    A0A8B9TGT2, U3IZV4
    Conserved Domains (1) summary
    pfam14580
    Location:114 → 194
    LRR_9; Leucine-rich repeat

  4. XM_038180950.1 → XP_038036878.1  leucine-rich melanocyte differentiation-associated protein isoform X1

    Conserved Domains (1) summary
    pfam14580
    Location:114 → 194
    LRR_9; Leucine-rich repeat

  5. XM_038180951.1 → XP_038036879.1  leucine-rich melanocyte differentiation-associated protein isoform X2

    Conserved Domains (1) summary
    pfam14580
    Location:114 → 192
    LRR_9; Leucine-rich repeat

  6. XM_038180948.1 → XP_038036876.1  leucine-rich melanocyte differentiation-associated protein isoform X1

    Conserved Domains (1) summary
    pfam14580
    Location:114 → 194
    LRR_9; Leucine-rich repeat

  7. XM_038180954.1 → XP_038036882.1  leucine-rich melanocyte differentiation-associated protein isoform X5

    Conserved Domains (2) summary
    sd00031
    Location:38 → 61
    LRR_1; leucine-rich repeat [structural motif]
    pfam14580
    Location:83 → 163
    LRR_9; Leucine-rich repeat

  8. XM_038180949.1 → XP_038036877.1  leucine-rich melanocyte differentiation-associated protein isoform X1

    Conserved Domains (1) summary
    pfam14580
    Location:114 → 194
    LRR_9; Leucine-rich repeat

  9. XM_038180952.1 → XP_038036880.1  leucine-rich melanocyte differentiation-associated protein isoform X3

    Conserved Domains (1) summary
    pfam14580
    Location:110 → 190
    LRR_9; Leucine-rich repeat

  10. XM_038180955.1 → XP_038036883.1  leucine-rich melanocyte differentiation-associated protein isoform X6

    Conserved Domains (2) summary
    sd00031
    Location:34 → 57
    LRR_1; leucine-rich repeat [structural motif]
    pfam14580
    Location:79 → 159
    LRR_9; Leucine-rich repeat

  11. XM_038180957.1 → XP_038036885.1  leucine-rich melanocyte differentiation-associated protein isoform X9

    Conserved Domains (1) summary
    pfam14580
    Location:114 → 194
    LRR_9; Leucine-rich repeat
Nucleotide Protein
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