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LOC101783214 protein YABBY 3 [ Setaria italica (foxtail millet) ]

Gene ID: 101783214, updated on 21-Dec-2023

Summary

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Gene symbol
LOC101783214
Gene description
protein YABBY 3
Locus tag
SETIT_036788mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Setaria italica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Genomic context

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Location:
chromosome: IX
Exon count:
7
Annotation release Status Assembly Chr Location
103 current Setaria_italica_v2.0 (GCF_000263155.2) IX NC_028458.1 (14115253..14119715)
101 previous assembly Setaria V1 (GCF_000263155.1) Unplaced Scaffold NW_004675969.1 (14115286..14119722)

Chromosome IX - NC_028458.1Genomic Context describing neighboring genes Neighboring gene methionine aminopeptidase 1A Neighboring gene U1 small nuclear ribonucleoprotein 70 kDa Neighboring gene protein GRAVITROPIC IN THE LIGHT 1 Neighboring gene monocopper oxidase-like protein SKU5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in abaxial cell fate specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fruit development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in polarity specification of adaxial/abaxial axis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of leaf development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of shoot apical meristem development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein YABBY 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Setaria italica Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Setaria_italica_v2.0 Primary Assembly

Genomic

  1. NC_028458.1 Reference Setaria_italica_v2.0 Primary Assembly

    Range
    14115253..14119715
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004982599.3 → XP_004982656.1  protein YABBY 3

    UniProtKB/TrEMBL
    K4AD31
    Conserved Domains (1) summary
    pfam04690
    Location:46 → 261
    YABBY; YABBY protein
Nucleotide Protein Strain
Heading Accession and Version

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