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LOC101777934 nuclear transcription factor Y subunit A-4 [ Setaria italica (foxtail millet) ]

Gene ID: 101777934, updated on 21-Dec-2023

Summary

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Gene symbol
LOC101777934
Gene description
nuclear transcription factor Y subunit A-4
Locus tag
SETIT_030663mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Setaria italica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Genomic context

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Location:
chromosome: II
Exon count:
9
Annotation release Status Assembly Chr Location
103 current Setaria_italica_v2.0 (GCF_000263155.2) II NC_028451.1 (45314774..45319259)
101 previous assembly Setaria V1 (GCF_000263155.1) Unplaced Scaffold NW_004675962.1 (45315609..45320038)

Chromosome II - NC_028451.1Genomic Context describing neighboring genes Neighboring gene protein EGG APPARATUS-1 Neighboring gene PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like Neighboring gene uncharacterized LOC101779150 Neighboring gene uncharacterized LOC101779551

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCAAT-binding factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear transcription factor Y subunit A-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Setaria italica Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Setaria_italica_v2.0 Primary Assembly

Genomic

  1. NC_028451.1 Reference Setaria_italica_v2.0 Primary Assembly

    Range
    45314774..45319259
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004958195.2 → XP_004958252.1  nuclear transcription factor Y subunit A-4 isoform X1

    See identical proteins and their annotated locations for XP_004958252.1

    UniProtKB/TrEMBL
    K3ZVN2
    Conserved Domains (1) summary
    smart00521
    Location:156 → 217
    CBF; CCAAT-Binding transcription Factor

  2. XM_022823913.1 → XP_022679648.1  nuclear transcription factor Y subunit A-4 isoform X2

    UniProtKB/TrEMBL
    K3ZVX0
    Conserved Domains (1) summary
    pfam02045
    Location:139 → 194
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  3. XM_004958197.2 → XP_004958254.1  nuclear transcription factor Y subunit A-4 isoform X2

    See identical proteins and their annotated locations for XP_004958254.1

    UniProtKB/TrEMBL
    K3ZVX0
    Conserved Domains (1) summary
    pfam02045
    Location:139 → 194
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  4. XM_004958194.3 → XP_004958251.1  nuclear transcription factor Y subunit A-4 isoform X1

    See identical proteins and their annotated locations for XP_004958251.1

    UniProtKB/TrEMBL
    K3ZVN2
    Conserved Domains (1) summary
    smart00521
    Location:156 → 217
    CBF; CCAAT-Binding transcription Factor

  5. XM_022823911.1 → XP_022679646.1  nuclear transcription factor Y subunit A-4 isoform X1

    UniProtKB/TrEMBL
    K3ZVN2
    Conserved Domains (1) summary
    smart00521
    Location:156 → 217
    CBF; CCAAT-Binding transcription Factor

  6. XM_012843451.2 → XP_012698905.1  nuclear transcription factor Y subunit A-4 isoform X1

    See identical proteins and their annotated locations for XP_012698905.1

    UniProtKB/TrEMBL
    K3ZVN2
    Conserved Domains (1) summary
    smart00521
    Location:156 → 217
    CBF; CCAAT-Binding transcription Factor

  7. XM_004958196.3 → XP_004958253.1  nuclear transcription factor Y subunit A-4 isoform X2

    See identical proteins and their annotated locations for XP_004958253.1

    UniProtKB/TrEMBL
    K3ZVX0
    Conserved Domains (1) summary
    pfam02045
    Location:139 → 194
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  8. XM_022823912.1 → XP_022679647.1  nuclear transcription factor Y subunit A-4 isoform X2

    UniProtKB/TrEMBL
    K3ZVX0
    Conserved Domains (1) summary
    pfam02045
    Location:139 → 194
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  9. XM_012843453.2 → XP_012698907.1  nuclear transcription factor Y subunit A-4 isoform X2

    See identical proteins and their annotated locations for XP_012698907.1

    UniProtKB/TrEMBL
    K3ZVX0
    Conserved Domains (1) summary
    pfam02045
    Location:139 → 194
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  10. XM_012843452.2 → XP_012698906.1  nuclear transcription factor Y subunit A-4 isoform X2

    See identical proteins and their annotated locations for XP_012698906.1

    UniProtKB/TrEMBL
    K3ZVX0
    Conserved Domains (1) summary
    pfam02045
    Location:139 → 194
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  11. XM_022823910.1 → XP_022679645.1  nuclear transcription factor Y subunit A-4 isoform X1

    UniProtKB/TrEMBL
    K3ZVN2
    Conserved Domains (1) summary
    smart00521
    Location:156 → 217
    CBF; CCAAT-Binding transcription Factor
Nucleotide Protein Strain
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