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Ablim3 actin binding LIM protein family member 3 [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101709983, updated on 8-Mar-2024

Summary

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Gene symbol
Ablim3
Gene description
actin binding LIM protein family member 3
See related
Ensembl:ENSHGLG00000012245
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624774.1 (8510132..8631034)

NW_004624774.1Genomic Context describing neighboring genes Neighboring gene SH3 domain and tetratricopeptide repeats 2 Neighboring gene uncharacterized LOC110351106 Neighboring gene uncharacterized LOC106010175 Neighboring gene actin filament associated protein 1 like 1 Neighboring gene GrpE like 2, mitochondrial

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004624774 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lamellipodium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stress fiber IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
actin-binding LIM protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624774.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    8510132..8631034
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021266186.1 → XP_021121845.1  actin-binding LIM protein 3 isoform X3

    UniProtKB/TrEMBL
    G5C3A8
    Conserved Domains (6) summary
    smart00153
    Location:662 → 697
    VHP; Villin headpiece domain
    cd09328
    Location:142 → 197
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:214 → 265
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:273 → 328
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    cl02475
    Location:23 → 137
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
    pfam16182
    Location:337 → 661
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  2. XM_021266187.1 → XP_021121846.1  actin-binding LIM protein 3 isoform X4

    UniProtKB/TrEMBL
    G5C3A8
    Conserved Domains (6) summary
    smart00153
    Location:659 → 694
    VHP; Villin headpiece domain
    cd09328
    Location:142 → 197
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:214 → 265
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:273 → 328
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    cl02475
    Location:23 → 137
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
    pfam16182
    Location:337 → 658
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  3. XM_021266184.1 → XP_021121843.1  actin-binding LIM protein 3 isoform X1

    UniProtKB/TrEMBL
    G5C3A8
    Conserved Domains (6) summary
    smart00153
    Location:711 → 746
    VHP; Villin headpiece domain
    cd09328
    Location:142 → 197
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:214 → 265
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:273 → 328
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    cl02475
    Location:23 → 137
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
    pfam16182
    Location:337 → 710
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  4. XM_021266185.1 → XP_021121844.1  actin-binding LIM protein 3 isoform X2

    UniProtKB/TrEMBL
    G5C3A8
    Conserved Domains (6) summary
    smart00153
    Location:678 → 713
    VHP; Villin headpiece domain
    cd09328
    Location:142 → 197
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:214 → 265
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:273 → 328
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    cl02475
    Location:23 → 137
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
    pfam16182
    Location:337 → 677
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  5. XM_021266188.1 → XP_021121847.1  actin-binding LIM protein 3 isoform X5

    UniProtKB/TrEMBL
    G5C3A8
    Conserved Domains (6) summary
    smart00153
    Location:649 → 684
    VHP; Villin headpiece domain
    cd09328
    Location:142 → 197
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:214 → 265
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:273 → 328
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    cl02475
    Location:23 → 137
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
    pfam16182
    Location:337 → 648
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  6. XM_021266190.1 → XP_021121849.1  actin-binding LIM protein 3 isoform X9

    UniProtKB/TrEMBL
    G5C3A8
    Conserved Domains (6) summary
    smart00153
    Location:600 → 635
    VHP; Villin headpiece domain
    cd09328
    Location:142 → 197
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:214 → 265
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:273 → 328
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    cl02475
    Location:23 → 137
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
    pfam16182
    Location:337 → 599
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  7. XM_021266189.1 → XP_021121848.1  actin-binding LIM protein 3 isoform X7

    UniProtKB/TrEMBL
    G5C3A8
    Conserved Domains (6) summary
    smart00153
    Location:616 → 651
    VHP; Villin headpiece domain
    cd09328
    Location:142 → 197
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:214 → 265
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:273 → 328
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    cl02475
    Location:23 → 137
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
    pfam16182
    Location:337 → 615
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  8. XM_021266192.1 → XP_021121851.1  actin-binding LIM protein 3 isoform X12

    UniProtKB/TrEMBL
    G5C3A8
    Conserved Domains (6) summary
    smart00153
    Location:537 → 572
    VHP; Villin headpiece domain
    cd09327
    Location:23 → 74
    LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
    cd09328
    Location:79 → 134
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:151 → 202
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:210 → 265
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam16182
    Location:274 → 536
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  9. XM_004854377.3 → XP_004854434.1  actin-binding LIM protein 3 isoform X6

    UniProtKB/TrEMBL
    G5C3A8
    Related
    ENSHGLP00000017103.1, ENSHGLT00000017274.1
    Conserved Domains (6) summary
    smart00153
    Location:648 → 683
    VHP; Villin headpiece domain
    cd09327
    Location:23 → 74
    LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
    cd09328
    Location:79 → 134
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:151 → 202
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:210 → 265
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam16182
    Location:274 → 647
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  10. XM_021266191.1 → XP_021121850.1  actin-binding LIM protein 3 isoform X10

    UniProtKB/TrEMBL
    G5C3A8
    Conserved Domains (6) summary
    smart00153
    Location:599 → 634
    VHP; Villin headpiece domain
    cd09327
    Location:23 → 74
    LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
    cd09328
    Location:79 → 134
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:151 → 202
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:210 → 265
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam16182
    Location:274 → 598
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  11. XM_004854384.3 → XP_004854441.1  actin-binding LIM protein 3 isoform X11

    UniProtKB/TrEMBL
    G5C3A8
    Conserved Domains (6) summary
    smart00153
    Location:553 → 588
    VHP; Villin headpiece domain
    cd09327
    Location:23 → 74
    LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
    cd09328
    Location:79 → 134
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:151 → 202
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:210 → 265
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam16182
    Location:274 → 552
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  12. XM_004854382.3 → XP_004854439.1  actin-binding LIM protein 3 isoform X8

    UniProtKB/TrEMBL
    G5C3A8
    Conserved Domains (6) summary
    smart00153
    Location:615 → 650
    VHP; Villin headpiece domain
    cd09327
    Location:23 → 74
    LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
    cd09328
    Location:79 → 134
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:151 → 202
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:210 → 265
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam16182
    Location:274 → 614
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM
Nucleotide Protein
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