U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Slitrk6 SLIT and NTRK like family member 6 [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101700320, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
Slitrk6
Gene description
SLIT and NTRK like family member 6
Locus tag
GW7_04850
See related
Ensembl:ENSHGLG00000000248
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624779.1 (7030017..7036581)

NW_004624779.1Genomic Context describing neighboring genes Neighboring gene GTP-binding protein Rit1-like Neighboring gene tropomyosin alpha-4 chain pseudogene Neighboring gene coiled-coil domain containing 178 Neighboring gene uncharacterized LOC110344041

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_004624779 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genome sequencing reveals insights into physiology and longevity of the naked mole rat. Kim EB, et al. Nature, 2011 Oct 12. PMID 21993625, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of presynapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
SLIT and NTRK-like protein 6

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624779.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    7030017..7036581
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004855191.2 → XP_004855248.1  SLIT and NTRK-like protein 6

    UniProtKB/TrEMBL
    G5AMJ4
    Related
    ENSHGLP00000000243.1, ENSHGLT00000000276.1
    Conserved Domains (7) summary
    smart00082
    Location:523 → 573
    LRRCT; Leucine rich repeat C-terminal domain
    cd00116
    Location:388 → 524
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00031
    Location:216 → 228
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:100 → 119
    LRR_RI; leucine-rich repeat [structural motif]
    pfam12799
    Location:395 → 433
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:394 → 451
    LRR_8; Leucine rich repeat
    cl15307
    Location:224 → 274
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.