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Phf2 PHD finger protein 2 [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101698987, updated on 8-Mar-2024

Summary

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Gene symbol
Phf2
Gene description
PHD finger protein 2
See related
Ensembl:ENSHGLG00000003985
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624868.1 (2890730..2992788, complement)

NW_004624868.1Genomic Context describing neighboring genes Neighboring gene BARX homeobox 1 Neighboring gene proteasome maturation protein pseudogene Neighboring gene family with sequence similarity 120 member A Neighboring gene septin-7-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004624868 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein demethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysine-specific demethylase PHF2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624868.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    2890730..2992788 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021248501.1 → XP_021104160.1  lysine-specific demethylase PHF2

    UniProtKB/TrEMBL
    A0A0P6JDV4
    Related
    ENSHGLP00000005438.1, ENSHGLT00000005509.1
    Conserved Domains (3) summary
    pfam02373
    Location:253 → 353
    JmjC; JmjC domain, hydroxylase
    smart00558
    Location:218 → 281
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cl22851
    Location:49 → 73
    PHD_SF; PHD finger superfamily
Nucleotide Protein
Heading Accession and Version

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