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LOC101697838 small nuclear ribonucleoprotein-associated protein N [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101697838, updated on 9-Nov-2023

Summary

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Gene symbol
LOC101697838
Gene description
small nuclear ribonucleoprotein-associated protein N
Locus tag
GW7_03768
See related
Ensembl:ENSHGLG00000019812
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
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Genomic context

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See LOC101697838 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624835.1 (6385109..6385942, complement)

NW_004624835.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein phosphatase PP1-gamma catalytic subunit pseudogene Neighboring gene signal recognition particle 9 Neighboring gene ENAH actin regulator Neighboring gene SNRPN upstream reading frame protein-like Neighboring gene deoxynucleotidyltransferase terminal-interacting protein 2 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004624835 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing reveals insights into physiology and longevity of the naked mole rat. Kim EB, et al. Nature, 2011 Oct 12. PMID 21993625, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U5 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
small nuclear ribonucleoprotein-associated protein N

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624835.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    6385109..6385942 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004867455.3 → XP_004867512.1  small nuclear ribonucleoprotein-associated protein N

    See identical proteins and their annotated locations for XP_004867512.1

    UniProtKB/TrEMBL
    G5C215, G5C8W5
    Related
    ENSHGLP00000027758.1, ENSHGLT00000028022.1
    Conserved Domains (1) summary
    cd01717
    Location:5 → 83
    Sm_B; Sm protein B
Nucleotide Protein
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