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Nid1 nidogen 1 [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101696415, updated on 8-Mar-2024

Summary

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Gene symbol
Nid1
Gene description
nidogen 1
Locus tag
GW7_07856
See related
Ensembl:ENSHGLG00000017135
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Also known as
Nidogen-1
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624775.1 (14486357..14563341)

NW_004624775.1Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor 137B Neighboring gene uncharacterized LOC110351147 Neighboring gene nuclear receptor coactivator 6 pseudogene Neighboring gene uncharacterized LOC110351148 Neighboring gene uncharacterized LOC110351165 Neighboring gene uncharacterized LOC110351166 Neighboring gene septin-7 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004624775 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing reveals insights into physiology and longevity of the naked mole rat. Kim EB, et al. Nature, 2011 Oct 12. PMID 21993625, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-matrix adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nidogen-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624775.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    14486357..14563341
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004854619.3 → XP_004854676.1  nidogen-1

    UniProtKB/TrEMBL
    G5APM0
    Related
    ENSHGLP00000024039.1, ENSHGLT00000024258.1
    Conserved Domains (10) summary
    smart00135
    Location:1006 → 1047
    LY; Low-density lipoprotein-receptor YWTD domain
    smart00179
    Location:702 → 743
    EGF_CA; Calcium-binding EGF-like domain
    smart00539
    Location:106 → 269
    NIDO; Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins
    cd00255
    Location:421 → 652
    nidG2; Nidogen, G2 domain; Nidogen is an important component of the basement membrane, an extracellular sheet-like matrix. Nidogen is a multifunctional protein that interacts with many other basement membrane proteins, like collagen, perlecan, lamin, and has a ...
    cd05819
    Location:1015 → 1050
    NHL; NHL repeat [structural motif]
    pfam00058
    Location:984 → 1021
    Ldl_recept_b; Low-density lipoprotein receptor repeat class B
    pfam00086
    Location:841 → 911
    Thyroglobulin_1; Thyroglobulin type-1 repeat
    pfam12947
    Location:803 → 831
    EGF_3; EGF domain
    pfam14670
    Location:1204 → 1227
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    cl18310
    Location:1012 → 1195
    NHL; NHL repeat unit of beta-propeller proteins
Nucleotide Protein
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