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TGFBRAP1 transforming growth factor beta receptor associated protein 1 [ Mustela putorius furo (domestic ferret) ]

Gene ID: 101689066, updated on 8-Mar-2024

Summary

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Gene symbol
TGFBRAP1
Gene description
transforming growth factor beta receptor associated protein 1
See related
Ensembl:ENSMPUG00000010848
Gene type
protein coding
RefSeq status
MODEL
Organism
Mustela putorius furo (sub-species: furo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Mustelinae; Mustela
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
102 current ASM1176430v1.1 (GCF_011764305.1) Unplaced Scaffold NW_025421321.1 (5933842..6007458)
101 previous assembly MusPutFur1.0 (GCF_000215625.1) Unplaced Scaffold NW_004569247.1 (4633686..4688943)

NW_025421321.1Genomic Context describing neighboring genes Neighboring gene chromosome unknown C2orf49 homolog Neighboring gene uncharacterized LOC101688602 Neighboring gene G protein-coupled receptor 45 Neighboring gene mitochondrial ribosomal protein S9 Neighboring gene U4 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequencing, annotation, and characterization of the influenza ferret infectome. León AJ, et al. J Virol, 2013 Feb. PMID 23236062, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosomal vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transforming growth factor-beta receptor-associated protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mustela putorius furo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1176430v1.1 Primary Assembly

Genomic

  1. NW_025421321.1 Reference ASM1176430v1.1 Primary Assembly

    Range
    5933842..6007458
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045077617.1 → XP_044933552.1  transforming growth factor-beta receptor-associated protein 1 isoform X2

    UniProtKB/TrEMBL
    M3YHF3
    Conserved Domains (4) summary
    pfam10366
    Location:448 → 550
    Vps39_1; Vacuolar sorting protein 39 domain 1
    pfam10367
    Location:738 → 845
    Vps39_2; Vacuolar sorting protein 39 domain 2
    cl02434
    Location:34 → 283
    CNH; CNH domain
    cl26078
    Location:584 → 698
    Clathrin; Region in Clathrin and VPS

  2. XM_004764374.3 → XP_004764431.2  transforming growth factor-beta receptor-associated protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8U0N1F1
    Conserved Domains (2) summary
    pfam10366
    Location:458 → 560
    Vps39_1; Vacuolar sorting protein 39 domain 1
    cl11424
    Location:717 → 814
    nitrilase; Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes
Nucleotide Protein
Heading Accession and Version

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