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TRIM23 tripartite motif containing 23 [ Echinops telfairi (small Madagascar hedgehog) ]

Gene ID: 101659418, updated on 20-Sep-2024

Summary

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Gene symbol
TRIM23
Gene description
tripartite motif containing 23
Gene type
protein coding
RefSeq status
MODEL
Organism
Echinops telfairi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Tenrecidae; Tenrecinae; Echinops
Orthologs
human mouse all
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Genomic context

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See TRIM23 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
103 current ASM31398v2 (GCF_000313985.2) Unplaced Scaffold NW_022111373.1 (86236456..86279569)
101 previous assembly EchTel2.0 (GCF_000313985.1) Unplaced Scaffold NW_004558716.1 (36443219..36483815)

NW_022111373.1Genomic Context describing neighboring genes Neighboring gene small glutamine rich tetratricopeptide repeat co-chaperone beta Neighboring gene palmitoyltransferase ZDHHC6-like Neighboring gene trafficking protein particle complex subunit 13 Neighboring gene 60S ribosomal protein L5-like Neighboring gene peptidylprolyl isomerase domain and WD repeat containing 1 Neighboring gene centromere protein K

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase TRIM23

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Echinops telfairi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM31398v2 Primary Assembly

Genomic

  1. NW_022111373.1 Reference ASM31398v2 Primary Assembly

    Range
    86236456..86279569
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004703570.3 → XP_004703627.1  E3 ubiquitin-protein ligase TRIM23

    Conserved Domains (5) summary
    smart00502
    Location:226 → 370
    BBC; B-Box C-terminal domain
    cd04158
    Location:406 → 574
    ARD1; (ADP-ribosylation factor domain protein 1 (ARD1)
    cd16645
    Location:28 → 77
    mRING-HC-C3HC3D_TRIM23_C-IX; Modified RING finger, HC subclass (C3HC3D-type), found in tripartite motif-containing protein 23 (TRIM23) and similar proteins
    cd19773
    Location:123 → 172
    Bbox2_TRIM23_C-IX_rpt1; first B-box-type 2 zinc finger found in tripartite motif-containing protein 23 (TRIM23) and similar proteins
    cd19774
    Location:174 → 223
    Bbox2_TRIM23_C-IX_rpt2; second B-box-type 2 zinc finger found in tripartite motif-containing protein 23 (TRIM23) and similar proteins
Nucleotide Protein
Heading Accession and Version

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