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ATG3 autophagy related 3 [ Echinops telfairi (small Madagascar hedgehog) ]

Gene ID: 101646585, updated on 20-Sep-2024

Summary

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Gene symbol
ATG3
Gene description
autophagy related 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Echinops telfairi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Tenrecidae; Tenrecinae; Echinops
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
103 current ASM31398v2 (GCF_000313985.2) Unplaced Scaffold NW_022103902.1 (13308839..13342473, complement)
101 previous assembly EchTel2.0 (GCF_000313985.1) Unplaced Scaffold NW_004558724.1 (13308842..13342414, complement)

NW_022103902.1Genomic Context describing neighboring genes Neighboring gene OX-2 membrane glycoprotein Neighboring gene small nucleolar RNA SNORA26 Neighboring gene solute carrier family 35 member A5 Neighboring gene uncharacterized LOC123521239

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Atg8-family ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagy of mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytoplasmic ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin-like-conjugating enzyme ATG3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Echinops telfairi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM31398v2 Primary Assembly

Genomic

  1. NW_022103902.1 Reference ASM31398v2 Primary Assembly

    Range
    13308839..13342473 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004706396.2 → XP_004706453.1  ubiquitin-like-conjugating enzyme ATG3

    Conserved Domains (3) summary
    pfam03986
    Location:8 → 133
    Autophagy_N; Autophagocytosis associated protein (Atg3), N-terminal domain
    pfam03987
    Location:203 → 264
    Autophagy_act_C; Autophagocytosis associated protein, active-site domain
    pfam10381
    Location:285 → 309
    Autophagy_C; Autophagocytosis associated protein C-terminal
Nucleotide Protein
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