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ALKBH1 alkB homolog 1, histone H2A dioxygenase [ Condylura cristata (star-nosed mole) ]

Gene ID: 101624019, updated on 11-Apr-2024

Summary

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Gene symbol
ALKBH1
Gene description
alkB homolog 1, histone H2A dioxygenase
Gene type
protein coding
RefSeq status
MODEL
Organism
Condylura cristata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Talpidae; Condylura
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
101 current ConCri1.0 (GCF_000260355.1) Unplaced Scaffold NW_004567114.1 (18708669..18727298)

NW_004567114.1Genomic Context describing neighboring genes Neighboring gene aarF domain containing kinase 1 Neighboring gene SNW domain containing 1 Neighboring gene SRA stem-loop interacting RNA binding protein Neighboring gene serine palmitoyltransferase long chain base subunit 2 Neighboring gene isthmin 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004567114.1 Unplaced Scaffold Reference ConCri1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables broad specificity oxidative DNA demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ferrous iron binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidative RNA demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in oxidative RNA demethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alkylated DNA repair protein alkB homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Condylura cristata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ConCri1.0

Genomic

  1. NW_004567114.1 Reference ConCri1.0

    Range
    18708669..18727298
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004681661.2 → XP_004681718.1  alkylated DNA repair protein alkB homolog 1 isoform X1

    Conserved Domains (2) summary
    cl07893
    Location:58 → 118
    AmyAc_family; Alpha amylase catalytic domain family
    cl21496
    Location:119 → 289
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

  2. XM_012724556.1 → XP_012580010.1  alkylated DNA repair protein alkB homolog 1 isoform X2

    Conserved Domains (1) summary
    cl21496
    Location:59 → 229
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily
Nucleotide Protein
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