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Col1a1 collagen type I alpha 1 chain [ Octodon degus (degu) ]

Gene ID: 101591385, updated on 8-Mar-2024

Summary

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Gene symbol
Col1a1
Gene description
collagen type I alpha 1 chain
See related
Ensembl:ENSODEG00000017010
Gene type
protein coding
RefSeq status
MODEL
Organism
Octodon degus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Octodontidae; Octodon
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
51
Annotation release Status Assembly Chr Location
102 current OctDeg1.0 (GCF_000260255.1) Unplaced Scaffold NW_004524632.1 (5766169..5780979)

NW_004524632.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 92 Neighboring gene protein regulator of cytokinesis 1 pseudogene Neighboring gene spermatid-specific linker histone H1-like protein Neighboring gene sarcoglycan alpha Neighboring gene protein phosphatase 1 regulatory subunit 9B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004524632 Unplaced Scaffold Reference OctDeg1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-1(I) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Octodon degus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OctDeg1.0 Primary Assembly

Genomic

  1. NW_004524632.1 Reference OctDeg1.0 Primary Assembly

    Range
    5766169..5780979
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023717911.1 → XP_023573679.1  collagen alpha-1(I) chain

    UniProtKB/TrEMBL
    A0A6P6EMX2
    Related
    ENSODEP00000023192.1, ENSODET00000023461.1
    Conserved Domains (5) summary
    pfam01391
    Location:234 → 293
    Collagen; Collagen triple helix repeat (20 copies)
    pfam00093
    Location:38 → 94
    VWC; von Willebrand factor type C domain
    pfam01410
    Location:1227 → 1460
    COLFI; Fibrillar collagen C-terminal domain
    cl26386
    Location:447 → 638
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
    cl28310
    Location:903 → 1109
    Rho; Transcription termination factor Rho [Transcription]
Nucleotide Protein
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