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Pdxk pyridoxal kinase [ Octodon degus (degu) ]

Gene ID: 101569846, updated on 8-Mar-2024

Summary

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Gene symbol
Pdxk
Gene description
pyridoxal kinase
See related
Ensembl:ENSODEG00000013386
Gene type
protein coding
RefSeq status
MODEL
Organism
Octodon degus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Octodontidae; Octodon
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
102 current OctDeg1.0 (GCF_000260255.1) Unplaced Scaffold NW_004524621.1 (6029417..6048876, complement)

NW_004524621.1Genomic Context describing neighboring genes Neighboring gene ribosomal RNA processing 1 Neighboring gene cystatin B Neighboring gene 40S ribosomal protein S6 pseudogene Neighboring gene U2 spliceosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004524621 Unplaced Scaffold Reference OctDeg1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in pyridoxal 5'-phosphate salvage IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pyridoxal kinase
Names
pyridoxal (pyridoxine, vitamin B6) kinase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Octodon degus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OctDeg1.0 Primary Assembly

Genomic

  1. NW_004524621.1 Reference OctDeg1.0 Primary Assembly

    Range
    6029417..6048876 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004631801.2 → XP_004631858.1  pyridoxal kinase isoform X1

    UniProtKB/TrEMBL
    A0A6P3F4T1
    Related
    ENSODEP00000018162.1, ENSODET00000018393.1
    Conserved Domains (1) summary
    cl00192
    Location:4 → 304
    ribokinase_pfkB_like; ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, ...

  2. XM_023715871.1 → XP_023571639.1  pyridoxal kinase isoform X2

    UniProtKB/TrEMBL
    A0A6P6EHW5
    Conserved Domains (1) summary
    cl00192
    Location:21 → 296
    ribokinase_pfkB_like; ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, ...

  3. XM_023715870.1 → XP_023571638.1  pyridoxal kinase isoform X2

    UniProtKB/TrEMBL
    A0A6P6EHW5
    Conserved Domains (1) summary
    cl00192
    Location:21 → 296
    ribokinase_pfkB_like; ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, ...
Nucleotide Protein
Heading Accession and Version

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