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Sall3 spalt like transcription factor 3 [ Octodon degus (degu) ]

Gene ID: 101567536, updated on 8-Mar-2024

Summary

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Gene symbol
Sall3
Gene description
spalt like transcription factor 3
See related
Ensembl:ENSODEG00000002692
Gene type
protein coding
RefSeq status
MODEL
Organism
Octodon degus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Octodontidae; Octodon
Orthologs
human mouse all
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Genomic context

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See Sall3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
102 current OctDeg1.0 (GCF_000260255.1) Unplaced Scaffold NW_004524696.1 (7289382..7305921)

NW_004524696.1Genomic Context describing neighboring genes Neighboring gene apolipoprotein C-I-like Neighboring gene keratin, type II cytoskeletal 8-like Neighboring gene high mobility group protein B3 pseudogene Neighboring gene ribosome biogenesis protein BRX1 homolog pseudogene Neighboring gene ATPase phospholipid transporting 9B (putative)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004524696 Unplaced Scaffold Reference OctDeg1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sal-like protein 3
Names
sal-like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Octodon degus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OctDeg1.0 Primary Assembly

Genomic

  1. NW_004524696.1 Reference OctDeg1.0 Primary Assembly

    Range
    7289382..7305921
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004640199.1 → XP_004640256.1  sal-like protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A6P3FLS9
    Related
    ENSODEP00000003515.1, ENSODET00000003588.1
    Conserved Domains (4) summary
    COG5048
    Location:716 → 1166
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:692 → 712
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:1161 → 1181
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:704 → 729
    zf-H2C2_2; Zinc-finger double domain

  2. XM_004640200.1 → XP_004640257.1  sal-like protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A6P3F7A0
    Conserved Domains (5) summary
    smart00355
    Location:426 → 448
    ZnF_C2H2; zinc finger
    COG5048
    Location:418 → 725
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:692 → 712
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:1089 → 1109
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:704 → 729
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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