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Epha5 EPH receptor A5 [ Octodon degus (degu) ]

Gene ID: 101566775, updated on 11-Apr-2024

Summary

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Gene symbol
Epha5
Gene description
EPH receptor A5
See related
Ensembl:ENSODEG00000001548
Gene type
protein coding
RefSeq status
MODEL
Organism
Octodon degus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Octodontidae; Octodon
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
102 current OctDeg1.0 (GCF_000260255.1) Unplaced Scaffold NW_004524767.1 (3530167..3860343)

NW_004524767.1Genomic Context describing neighboring genes Neighboring gene protein odr-4 homolog pseudogene Neighboring gene glutamine--tRNA ligase pseudogene Neighboring gene RNA-binding protein FUS pseudogene Neighboring gene mitotic checkpoint protein BUB3 pseudogene Neighboring gene serine/threonine-protein phosphatase PP1-alpha catalytic subunit pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004524767 Unplaced Scaffold Reference OctDeg1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane-ephrin receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell surface receptor protein tyrosine kinase signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ephrin type-A receptor 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Octodon degus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OctDeg1.0 Primary Assembly

Genomic

  1. NW_004524767.1 Reference OctDeg1.0 Primary Assembly

    Range
    3530167..3860343
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023704186.1 → XP_023559954.1  ephrin type-A receptor 5

    UniProtKB/TrEMBL
    A0A6P6DIS0
    Related
    ENSODEP00000001967.1, ENSODET00000002016.1
    Conserved Domains (6) summary
    cd00063
    Location:463 → 553
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd05066
    Location:665 → 931
    PTKc_EphR_A; Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors
    pfam00041
    Location:353 → 441
    fn3; Fibronectin type III domain
    pfam14575
    Location:573 → 665
    EphA2_TM; Ephrin type-A receptor 2 transmembrane domain
    cl02704
    Location:54 → 226
    EphR_LBD; Ligand Binding Domain of Ephrin Receptors
    cl15755
    Location:960 → 998
    SAM_superfamily; SAM (Sterile alpha motif )
Nucleotide Protein
Heading Accession and Version

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