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Capn5 calpain 5 [ Octodon degus (degu) ]

Gene ID: 101565887, updated on 8-Mar-2024

Summary

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Gene symbol
Capn5
Gene description
calpain 5
See related
Ensembl:ENSODEG00000005118
Gene type
protein coding
RefSeq status
MODEL
Organism
Octodon degus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Octodontidae; Octodon
Orthologs
human mouse all
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Genomic context

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See Capn5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
102 current OctDeg1.0 (GCF_000260255.1) Unplaced Scaffold NW_004524625.1 (3233383..3288237)

NW_004524625.1Genomic Context describing neighboring genes Neighboring gene DNA polymerase epsilon subunit 2-like Neighboring gene ATP synthase subunit epsilon, mitochondrial-like Neighboring gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 Neighboring gene olfactory marker protein Neighboring gene myosin VIIA Neighboring gene glycerophosphodiester phosphodiesterase domain containing 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004524625 Unplaced Scaffold Reference OctDeg1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Octodon degus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OctDeg1.0 Primary Assembly

Genomic

  1. NW_004524625.1 Reference OctDeg1.0 Primary Assembly

    Range
    3233383..3288237
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023716654.1 → XP_023572422.1  calpain-5 isoform X3

    UniProtKB/TrEMBL
    A0A6P6EK71
    Conserved Domains (3) summary
    cd04046
    Location:515 → 638
    C2_Calpain; C2 domain present in Calpain proteins
    pfam00648
    Location:27 → 341
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:361 → 493
    Calpain_III; Calpain large subunit, domain III

  2. XM_004632526.3 → XP_004632583.1  calpain-5 isoform X3

    UniProtKB/TrEMBL
    A0A6P6EK71
    Related
    ENSODEP00000006854.1, ENSODET00000006960.1
    Conserved Domains (3) summary
    cd04046
    Location:515 → 638
    C2_Calpain; C2 domain present in Calpain proteins
    pfam00648
    Location:27 → 341
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:361 → 493
    Calpain_III; Calpain large subunit, domain III

  3. XM_023716650.1 → XP_023572418.1  calpain-5 isoform X1

    UniProtKB/TrEMBL
    A0A6P6EK40
    Conserved Domains (3) summary
    cd04046
    Location:571 → 694
    C2_Calpain; C2 domain present in Calpain proteins
    pfam00648
    Location:83 → 397
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:417 → 549
    Calpain_III; Calpain large subunit, domain III

  4. XM_023716651.1 → XP_023572419.1  calpain-5 isoform X2

    UniProtKB/TrEMBL
    A0A6P6EJC8
    Conserved Domains (3) summary
    cd04046
    Location:551 → 674
    C2_Calpain; C2 domain present in Calpain proteins
    pfam00648
    Location:63 → 377
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:397 → 529
    Calpain_III; Calpain large subunit, domain III

  5. XM_023716652.1 → XP_023572420.1  calpain-5 isoform X3

    UniProtKB/TrEMBL
    A0A6P6EK71
    Conserved Domains (3) summary
    cd04046
    Location:515 → 638
    C2_Calpain; C2 domain present in Calpain proteins
    pfam00648
    Location:27 → 341
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:361 → 493
    Calpain_III; Calpain large subunit, domain III
Nucleotide Protein
Heading Accession and Version

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