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Ikzf1 IKAROS family zinc finger 1 [ Octodon degus (degu) ]

Gene ID: 101562026, updated on 8-Mar-2024

Summary

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Gene symbol
Ikzf1
Gene description
IKAROS family zinc finger 1
See related
Ensembl:ENSODEG00000013105
Gene type
protein coding
RefSeq status
MODEL
Organism
Octodon degus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Octodontidae; Octodon
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
102 current OctDeg1.0 (GCF_000260255.1) Unplaced Scaffold NW_004524611.1 (1618557..1704656, complement)

NW_004524611.1Genomic Context describing neighboring genes Neighboring gene dopa decarboxylase Neighboring gene fidgetin like 1 Neighboring gene sperm microtubule inner protein 7 Neighboring gene zona pellucida binding protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004524611 Unplaced Scaffold Reference OctDeg1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-binding protein Ikaros

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Octodon degus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OctDeg1.0 Primary Assembly

Genomic

  1. NW_004524611.1 Reference OctDeg1.0 Primary Assembly

    Range
    1618557..1704656 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004630338.2 → XP_004630395.1  DNA-binding protein Ikaros isoform X8

    UniProtKB/TrEMBL
    A0A6P3F2B7
    Conserved Domains (4) summary
    COG5048
    Location:17 → 131
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:60 → 80
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:58 → 80
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:72 → 97
    zf-H2C2_2; Zinc-finger double domain

  2. XM_004630335.2 → XP_004630392.1  DNA-binding protein Ikaros isoform X7

    UniProtKB/TrEMBL
    A0A6P3ERD2
    Related
    ENSODEP00000017770.1, ENSODET00000017996.1
    Conserved Domains (4) summary
    COG5048
    Location:17 → 131
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:60 → 80
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:58 → 80
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:72 → 97
    zf-H2C2_2; Zinc-finger double domain

  3. XM_012514587.2 → XP_012370041.1  DNA-binding protein Ikaros isoform X4

    UniProtKB/TrEMBL
    A0A6P3VAD6
    Conserved Domains (3) summary
    COG5048
    Location:144 → 218
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:119 → 139
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:132 → 156
    zf-H2C2_2; Zinc-finger double domain

  4. XM_004630333.2 → XP_004630390.1  DNA-binding protein Ikaros isoform X3

    UniProtKB/TrEMBL
    A0A6P3F6E4
    Related
    ENSODEP00000017769.1, ENSODET00000017995.1
    Conserved Domains (3) summary
    COG5048
    Location:144 → 218
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:119 → 139
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:132 → 156
    zf-H2C2_2; Zinc-finger double domain

  5. XM_023714524.1 → XP_023570292.1  DNA-binding protein Ikaros isoform X5

    UniProtKB/TrEMBL
    A0A6P6EDZ6
    Conserved Domains (3) summary
    COG5048
    Location:163 → 290
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:139 → 159
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:152 → 176
    zf-H2C2_2; Zinc-finger double domain

  6. XM_023714523.1 → XP_023570291.1  DNA-binding protein Ikaros isoform X2

    UniProtKB/TrEMBL
    A0A6P6EDC6
    Conserved Domains (3) summary
    COG5048
    Location:163 → 258
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:139 → 159
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:152 → 176
    zf-H2C2_2; Zinc-finger double domain

  7. XM_023714522.1 → XP_023570290.1  DNA-binding protein Ikaros isoform X1

    UniProtKB/TrEMBL
    A0A6P6ED55
    Conserved Domains (3) summary
    COG5048
    Location:163 → 312
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:139 → 159
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:152 → 176
    zf-H2C2_2; Zinc-finger double domain

  8. XM_023714525.1 → XP_023570293.1  DNA-binding protein Ikaros isoform X6

    UniProtKB/TrEMBL
    A0A6P6EE58
    Conserved Domains (3) summary
    COG5048
    Location:61 → 135
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:36 → 56
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:49 → 73
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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