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CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component [ Sorex araneus (European shrew) ]

Gene ID: 101537484, updated on 8-Mar-2024

Summary

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Gene symbol
CTR9
Gene description
CTR9 homolog, Paf1/RNA polymerase II complex component
See related
EnsemblRapid:ENSSARG00000000331
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorex araneus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Soricidae; Soricinae; Sorex
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2023_04 current mSorAra2.pri (GCF_027595985.1) 6 NC_073307.1 (112312584..112345884)
101 previous assembly SorAra2.0 (GCF_000181275.1) Unplaced Scaffold NW_004545921.1 (6715736..6748973, complement)

Chromosome 6 - NC_073307.1Genomic Context describing neighboring genes Neighboring gene lymphatic vessel endothelial hyaluronan receptor 1 Neighboring gene inositol 1,4,5-triphosphate receptor associated 1 Neighboring gene charged multivesicular body protein 3-like Neighboring gene cytochrome b-c1 complex subunit 10-like Neighboring gene small Cajal body-specific RNA 3 Neighboring gene small nucleolar RNA U13 Neighboring gene small nucleolar RNA SNORD97 Neighboring gene eukaryotic translation initiation factor 4 gamma 2 Neighboring gene zinc finger BED-type containing 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Cdc73/Paf1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA polymerase-associated protein CTR9 homolog
Names
Ctr9, Paf1/RNA polymerase II complex component, homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027595985.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSorAra2.pri

Genomic

  1. NC_073307.1 Reference mSorAra2.pri

    Range
    112312584..112345884
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004613601.3 → XP_004613658.1  RNA polymerase-associated protein CTR9 homolog

    Related
    ENSSARP00000016650.1, ENSSART00000031115.1
    Conserved Domains (7) summary
    TIGR02795
    Location:310 → 420
    tol_pal_ybgF; tol-pal system protein YbgF
    sd00006
    Location:501 → 525
    TPR; TPR repeat [structural motif]
    pfam13414
    Location:165 → 228
    TPR_11; TPR repeat
    pfam13424
    Location:498 → 563
    TPR_12; Tetratricopeptide repeat
    pfam14559
    Location:691 → 750
    TPR_19; Tetratricopeptide repeat
    pfam14797
    Location:1029 → 1162
    SEEEED; Serine-rich region of AP3B1, clathrin-adaptor complex
    pfam15315
    Location:1022 → 1119
    FRG2; Facioscapulohumeral muscular dystrophy candidate 2
Nucleotide Protein
Heading Accession and Version

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