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LOC101514040 1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic [ Cicer arietinum (chickpea) ]

Gene ID: 101514040, updated on 9-Nov-2023

Summary

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Gene symbol
LOC101514040
Gene description
1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Cicer arietinum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Cicereae; Cicer
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Genomic context

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Location:
chromosome: Ca5
Exon count:
15
Annotation release Status Assembly Chr Location
102 current ASM33114v1 (GCF_000331145.1) Ca5 NC_021164.1 (31343869..31352187)

Chromosome Ca5 - NC_021164.1Genomic Context describing neighboring genes Neighboring gene protein NLP4 Neighboring gene catalase-4 Neighboring gene uncharacterized LOC101514592 Neighboring gene transfer RNA lysine (anticodon CUU)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_021164.1 Chromosome Ca5 Reference ASM33114v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,4-alpha-glucan branching enzyme activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cation binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycogen biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cicer arietinum Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM33114v1 Primary Assembly

Genomic

  1. NC_021164.1 Reference ASM33114v1 Primary Assembly

    Range
    31343869..31352187
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004500821.3 → XP_004500878.1  1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic isoform X1

    UniProtKB/TrEMBL
    A0A1S2Y995
    Conserved Domains (4) summary
    cd02854
    Location:143 → 238
    E_set_GBE_euk_N; N-terminal Early set domain associated with the catalytic domain of eukaryotic glycogen branching enzyme (also called 1,4 alpha glucan branching enzyme)
    cd11321
    Location:243 → 650
    AmyAc_bac_euk_BE; Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes
    PLN02447
    Location:70 → 784
    PLN02447; 1,4-alpha-glucan-branching enzyme
    pfam02806
    Location:669 → 771
    Alpha-amylase_C; Alpha amylase, C-terminal all-beta domain

  2. XM_027334404.1 → XP_027190205.1  1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic isoform X3

    UniProtKB/TrEMBL
    A0A3Q7YFB6

  3. XM_004500822.3 → XP_004500879.1  1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic isoform X2

    See identical proteins and their annotated locations for XP_004500879.1

    UniProtKB/TrEMBL
    A0A1S2Y849
    Conserved Domains (4) summary
    cd02854
    Location:71 → 166
    E_set_GBE_euk_N; N-terminal Early set domain associated with the catalytic domain of eukaryotic glycogen branching enzyme (also called 1,4 alpha glucan branching enzyme)
    cd11321
    Location:171 → 578
    AmyAc_bac_euk_BE; Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes
    PLN02447
    Location:1 → 712
    PLN02447; 1,4-alpha-glucan-branching enzyme
    pfam02806
    Location:597 → 699
    Alpha-amylase_C; Alpha amylase, C-terminal all-beta domain

  4. XM_012716019.2 → XP_012571473.1  1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic isoform X2

    See identical proteins and their annotated locations for XP_012571473.1

    UniProtKB/TrEMBL
    A0A1S2Y849
    Conserved Domains (4) summary
    cd02854
    Location:71 → 166
    E_set_GBE_euk_N; N-terminal Early set domain associated with the catalytic domain of eukaryotic glycogen branching enzyme (also called 1,4 alpha glucan branching enzyme)
    cd11321
    Location:171 → 578
    AmyAc_bac_euk_BE; Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes
    PLN02447
    Location:1 → 712
    PLN02447; 1,4-alpha-glucan-branching enzyme
    pfam02806
    Location:597 → 699
    Alpha-amylase_C; Alpha amylase, C-terminal all-beta domain
Nucleotide Protein
Heading Accession and Version

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