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sfmbt1 Scm like with four mbt domains 1 [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101486375, updated on 8-Mar-2024

Summary

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Gene symbol
sfmbt1
Gene description
Scm like with four mbt domains 1
See related
Ensembl:ENSMZEG00005011290
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG5
Exon count:
21
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG5 NC_036784.1 (9174357..9196066, complement)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531721.1 (9364812..9386647)

Linkage Group LG5 - NC_036784.1Genomic Context describing neighboring genes Neighboring gene store-operated calcium entry regulator STIMATE Neighboring gene transfer RNA arginine (anticodon ACG) Neighboring gene transfer RNA arginine (anticodon ACG) Neighboring gene protein kinase C delta type Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene uncharacterized LOC112434838

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
scm-like with four MBT domains protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036784.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    9174357..9196066 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012917523.4 → XP_012772977.1  scm-like with four MBT domains protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A3P9BYR6
    Related
    ENSMZEP00005015120.1, ENSMZET00005015610.1
    Conserved Domains (5) summary
    cd09581
    Location:799 → 882
    SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
    smart00454
    Location:810 → 874
    SAM; Sterile alpha motif
    smart00561
    Location:383 → 476
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam02820
    Location:185 → 253
    MBT; mbt repeat
    pfam12140
    Location:526 → 641
    DUF3588; Protein of unknown function (DUF3588)

  2. XM_004545321.3 → XP_004545378.1  scm-like with four MBT domains protein 1 isoform X1

    See identical proteins and their annotated locations for XP_004545378.1

    UniProtKB/TrEMBL
    A0A3P9BYR6
    Conserved Domains (5) summary
    cd09581
    Location:804 → 887
    SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
    smart00454
    Location:815 → 879
    SAM; Sterile alpha motif
    smart00561
    Location:383 → 476
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam02820
    Location:185 → 253
    MBT; mbt repeat
    pfam12140
    Location:526 → 641
    DUF3588; Protein of unknown function (DUF3588)

  3. XM_004545322.3 → XP_004545379.1  scm-like with four MBT domains protein 1 isoform X3

    See identical proteins and their annotated locations for XP_004545379.1

    UniProtKB/TrEMBL
    A0A3P9BYR6, A0A3P9BZN3
    Related
    ENSMZEP00005015096.1, ENSMZET00005015586.1
    Conserved Domains (5) summary
    cd09581
    Location:787 → 870
    SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
    smart00454
    Location:798 → 862
    SAM; Sterile alpha motif
    smart00561
    Location:366 → 459
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam02820
    Location:168 → 236
    MBT; mbt repeat
    pfam12140
    Location:509 → 624
    DUF3588; Protein of unknown function (DUF3588)
Nucleotide Protein
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