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odc1 ornithine decarboxylase 1 [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101484916, updated on 8-Mar-2024

Summary

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Gene symbol
odc1
Gene description
ornithine decarboxylase 1
See related
Ensembl:ENSMZEG00005009639
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG19
Exon count:
11
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG19 NC_036798.1 (12969347..12974679, complement)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531714.1 (25226..30559, complement)

Linkage Group LG19 - NC_036798.1Genomic Context describing neighboring genes Neighboring gene THAP domain-containing protein 5-like Neighboring gene uncharacterized LOC112436590 Neighboring gene nucleolar protein 10 Neighboring gene V-type proton ATPase subunit C 1-B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ornithine decarboxylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in putrescine biosynthetic process from ornithine IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ornithine decarboxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036798.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    12969347..12974679 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004539891.3 → XP_004539948.1  ornithine decarboxylase

    See identical proteins and their annotated locations for XP_004539948.1

    UniProtKB/TrEMBL
    A0A3P9BTA3
    Related
    ENSMZEP00005012841.1, ENSMZET00005013284.1
    Conserved Domains (1) summary
    cd00622
    Location:38 → 409
    PLPDE_III_ODC; Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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